2H13	Transcription	date	May 15, 2006
title	Crystal Structure Of Wdr5histone H3 Complex
authors	J.F.Couture, E.Collazo, R.C.Trievel
compound		source
Molecule: Wd-Repeat Protein 5 Chain: A Fragment: Residues 22-334 Synonym: Bmp2-Induced 3-Kb Gene Protein Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Wdr5 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Histone H3 Lys-4 Dimethylated Chain: B Engineered: Yes		Synthetic: Yes Other_details: Chemically Synthesized. Occurs Naturally In Sapiens (Humans)
symmetry	Space Group: C 2 2 21	R_factor 0.166 R_Free 0.200
crystal cell	length a length b length c angle alpha angle beta angle gamma 78.680 98.860 80.580 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.58 Å
ligand	MLY	enzyme
Gene Ontology	Chain Function Process Component A
Primary reference	Molecular recognition of histone H3 by the WD40 protein WDR5., Couture JF, Collazo E, Trievel RC, Nat Struct Mol Biol. 2006 Aug;13(8):698-703. Epub 2006 Jul 9. PMID:16829960

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (63 Kb) [Save to disk] Biological Unit Coordinates (2h13.pdb1.gz) 58 Kb LPC: Ligand-Protein Contacts for 2H13 CSU: Contacts of Structural Units for 2H13 Likely Quarternary Molecular Structure file(s) for 2H13 Structure Factors (665 Kb) Retrieve 2H13 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2H13 from S2C, [Save to disk] Re-refined 2h13 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2H13 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2H13

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2H13, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2h13_B] [2h13_A] [2h13] SWISS-PROT database: [P61964] Domain organization of [WDR5_HUMAN] by SWISSPFAM Domain found in 2H13: [WD40 ] by SMART

Other resources with information on 2H13

Community annotation for 2H13 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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