2H8N Transcription date Jun 07, 2006
title Structure Of A Glutamine-Rich Domain From Histone Deacetylase 4
authors L.Guo, A.Han, D.L.Bates, L.Chen
compound source
Molecule: Histone Deacetylase 4
Chain: A, B, C, D
Fragment: N-Terminal Glutamine-Rich Domain, Residues 62- 129;
Synonym: Hd4
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hdac4, Kiaa0288
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosetta Plyss
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28a
symmetry Space Group: C 1 2 1
R_factor 0.281 R_Free 0.307
length a length b length c angle alpha angle beta angle gamma
187.398 60.451 60.450 90.00 108.74 90.00
method X-Ray Diffractionresolution 2.60 Å
note 2H8N is a representative structure
A, D, C, B

Primary referenceCrystal structure of a conserved N-terminal domain of histone deacetylase 4 reveals functional insights into glutamine-rich domains., Guo L, Han A, Bates DL, Cao J, Chen L, Proc Natl Acad Sci U S A. 2007 Mar 13;104(11):4297-302. Epub 2007 Mar 5. PMID:17360518
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (51 Kb) [Save to disk]
  • Biological Unit Coordinates (2h8n.pdb1.gz) 47 Kb
  • CSU: Contacts of Structural Units for 2H8N
  • Likely Quarternary Molecular Structure file(s) for 2H8N
  • Structure Factors (612 Kb)
  • Retrieve 2H8N in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2H8N from S2C, [Save to disk]
  • Re-refined 2h8n structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2H8N in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2H8N
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2H8N, from MSDmotif at EBI
  • Fold representative 2h8n from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2h8n_B] [2h8n] [2h8n_A] [2h8n_D] [2h8n_C]
  • SWISS-PROT database: [P56524]
  • Domain organization of [HDAC4_HUMAN] by SWISSPFAM
  • Other resources with information on 2H8N
  • Community annotation for 2H8N at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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