2HKF Immune System date Jul 04, 2006
title Crystal Structure Of The Complex Fab M75- Peptide
authors V.Kral, P.Mader, R.Stouracova, M.Fabry, M.Horejsi, J.Brynda
compound source
Molecule: Immunoglobulin Light Chain Fab Fragment
Chain: L
Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Cell: Hybridoma Cells

Molecule: Immunoglobulin Heavy Chain Fab Fragment
Chain: H

Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Cell: Hybridoma Cells

Molecule: Carbonic Anhydrase 9
Chain: P
Synonym: Carbonic Anhydrase Ix, Carbonate Dehydratase Ix, C Caix, Membrane Antigen Mn, P5458n, Renal Cell Carcinoma-As Antigen G250, Rcc-Associated Antigen G250, Pmw1;
Ec: 4.2.1.1
Engineered: Yes

Synthetic: Yes
Other_details: The Peptide Was Chemically Synthesized. The Of The Peptide Is Naturally Found In Homo Sapiens (Human).
symmetry Space Group: P 1
R_factor 0.176 R_Free 0.242
crystal
cell
length a length b length c angle alpha angle beta angle gamma
40.388 43.145 58.023 85.03 88.47 85.67
method X-Ray Diffractionresolution 2.01 Å
ligand
enzyme Lyase E.C.4.2.1.1 BRENDA
Primary referenceStabilization of antibody structure upon association to a human carbonic anhydrase IX epitope studied by X-ray crystallography, microcalorimetry, and molecular dynamics simulations., Kral V, Mader P, Collard R, Fabry M, Horejsi M, Rezacova P, Kozisek M, Zavada J, Sedlacek J, Rulisek L, Brynda J, Proteins. 2008 May 15;71(3):1275-87. PMID:18041760
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (79 Kb) [Save to disk]
  • Biological Unit Coordinates (2hkf.pdb1.gz) 74 Kb
  • CSU: Contacts of Structural Units for 2HKF
  • Likely Quarternary Molecular Structure file(s) for 2HKF
  • Structure Factors (180 Kb)
  • Retrieve 2HKF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2HKF from S2C, [Save to disk]
  • Re-refined 2hkf structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2HKF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2HKF
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2HKF, from MSDmotif at EBI
  • Fold representative 2hkf from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2hkf_P] [2hkf_L] [2hkf_] [2hkf] [2hkf_H]
  • SWISS-PROT database: [Q16790] [P01631]
  • Domain organization of [CAH9_HUMAN] [KV2A7_MOUSE] by SWISSPFAM
  • Domains found in 2HKF: [IG_like] [IGv ] by SMART
  • Other resources with information on 2HKF
  • Community annotation for 2HKF at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science