2HQH	Structural Protein, Protein Binding	date	Jul 18, 2006
title	Crystal Structure Of P150glued And Clip-170
authors	I.Hayashi, M.Ikura
compound		source
Molecule: Dynactin-1 Chain: A, B, C, D Fragment: Cap-Gly Domain, Residues 15-107 Synonym: 150 Kda Dynein-Associated Polypeptide, Dp-150, Dap P150-Glued, P135; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Dctn1 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet15b
Molecule: Restin Chain: E, F, G, H Fragment: Second Zinc Finger Domain, Residues 1405-1427 Synonym: Cytoplasmic Linker Protein 170 Alpha-2, Clip-170, Sternberg Intermediate Filament-Associated Protein, Cytopla Linker Protein 1; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Rsn, Cyln1 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pgex-4t1
symmetry	Space Group: P 42 21 2	R_factor 0.194 R_Free 0.216
crystal cell	length a length b length c angle alpha angle beta angle gamma 122.800 122.800 68.400 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.80 Å
ligand	ZN	enzyme
Gene Ontology	Chain Function Process Component A, B, C, D F, E, H, G
Primary reference	CLIP170 autoinhibition mimics intermolecular interactions with p150Glued or EB1., Hayashi I, Plevin MJ, Ikura M, Nat Struct Mol Biol. 2007 Oct;14(10):980-1. Epub 2007 Sep 9. PMID:17828275

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (73 Kb) [Save to disk] Biological Unit Coordinates (2hqh.pdb1.gz) 18 Kb Biological Unit Coordinates (2hqh.pdb2.gz) 18 Kb Biological Unit Coordinates (2hqh.pdb3.gz) 18 Kb Biological Unit Coordinates (2hqh.pdb4.gz) 19 Kb Biological Unit Coordinates (2hqh.pdb5.gz) 135 Kb LPC: Ligand-Protein Contacts for 2HQH CSU: Contacts of Structural Units for 2HQH Likely Quarternary Molecular Structure file(s) for 2HQH Structure Factors (335 Kb) Retrieve 2HQH in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2HQH from S2C, [Save to disk] Re-refined 2hqh structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2HQH in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2HQH

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2HQH, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2hqh_H] [2hqh_D] [2hqh_E] [2hqh_C] [2hqh_A] [2hqh] [2hqh_G] [2hqh_B] [2hqh_F] SWISS-PROT database: [P30622] [Q14203] Domain organization of [CLIP1_HUMAN] [DCTN1_HUMAN] by SWISSPFAM Domains found in 2HQH: [CAP_GLY] [ZnF_C2HC ] by SMART

Other resources with information on 2HQH

Community annotation for 2HQH at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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Images from IMB Jena Image Library of Biological Macromolecules.

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