2ID5 Ligand Binding Protein,Membrane Protein date Sep 14, 2006
title Crystal Structure Of The Lingo-1 Ectodomain
authors L.Mosyak, A.Wood, B.Dwyer, M.Johnson, M.L.Stahl, W.S.Somers
compound source
Molecule: Leucine Rich Repeat Neuronal 6a
Chain: A, B, C, D
Fragment: Extracelullar Portion
Synonym: Lingo-1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Lrrn6a
Expression_system: Cricetulus Griseus
Expression_system_common: Chinese Hamster
Expression_system_taxid: 10029
Expression_system_strain: Lec 3.2.8.1
Expression_system_cell: Hampster Ovary Cells
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Psmeg
symmetry Space Group: P 21 21 2
R_factor 0.214 R_Free 0.255
crystal
cell
length a length b length c angle alpha angle beta angle gamma
201.517 149.720 157.486 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.70 Å
ligand MAN, NAG enzyme
Primary referenceThe structure of the Lingo-1 ectodomain, a module implicated in central nervous system repair inhibition., Mosyak L, Wood A, Dwyer B, Buddha M, Johnson M, Aulabaugh A, Zhong X, Presman E, Benard S, Kelleher K, Wilhelm J, Stahl ML, Kriz R, Gao Y, Cao Z, Ling HP, Pangalos MN, Walsh FS, Somers WS, J Biol Chem. 2006 Nov 24;281(47):36378-90. Epub 2006 Sep 27. PMID:17005555
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (325 Kb) [Save to disk]
  • Biological Unit Coordinates (2id5.pdb1.gz) 312 Kb
  • LPC: Ligand-Protein Contacts for 2ID5
  • CSU: Contacts of Structural Units for 2ID5
  • Likely Quarternary Molecular Structure file(s) for 2ID5
  • Retrieve 2ID5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2ID5 from S2C, [Save to disk]
  • View 2ID5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2ID5
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2ID5, from MSDmotif at EBI
  • Fold representative 2id5 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2id5_C] [2id5_D] [2id5] [2id5_A] [2id5_B]
  • SWISS-PROT database: [Q96FE5]
  • Domain organization of [LIGO1_HUMAN] by SWISSPFAM
  • Domains found in 2ID5: [IGc2] [LRR] [LRRCT] [LRRNT] [LRR_TYP ] by SMART
  • Other resources with information on 2ID5
  • Community annotation for 2ID5 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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