2IPP Hydrolase date Oct 12, 2006
title Crystal Structure Of The Tetragonal Form Of Human Liver Cathepsin B
authors C.P.Huber, R.L.Campbell, S.Hasnain, T.Hirama, R.To
compound source
Molecule: Cathepsin B
Chain: A
Fragment: Light Chain, Residues 80-126
Ec: 3.4.22.1
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Other_details: Liver

Molecule: Cathepsin B
Chain: B
Fragment: Heavy Chain, Residues 129-333

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Other_details: Liver
symmetry Space Group: P 43
R_factor
R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
85.580 85.580 34.390 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.15 Å
ligand PYS enzyme Hydrolase E.C.3.4.22.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (47 Kb) [Save to disk]
  • Biological Unit Coordinates (2ipp.pdb1.gz) 43 Kb
  • LPC: Ligand-Protein Contacts for 2IPP
  • CSU: Contacts of Structural Units for 2IPP
  • Likely Quarternary Molecular Structure file(s) for 2IPP
  • Retrieve 2IPP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2IPP from S2C, [Save to disk]
  • View 2IPP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2IPP
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2IPP, from MSDmotif at EBI
  • Fold representative 2ipp from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2ipp] [2ipp_B] [2ipp_A]
  • SWISS-PROT database: [P07858]
  • Domain organization of [CATB_HUMAN] by SWISSPFAM
  • Domain found in 2IPP: [Pept_C1 ] by SMART
  • Other resources with information on 2IPP
  • Community annotation for 2IPP at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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