2IYB Metal-Binding date Jul 14, 2006
title Structure Of Complex Between The 3rd Lim Domain Of Tes And T Domain Of Mena
authors D.C.Briggs, N.Q.Mcdonald
compound source
Molecule: Protein Enabled Homolog
Chain: A, B, C, D
Fragment: Evh1 Domain, Residues 1-113
Synonym: Mena
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Fb810
Expression_system_plasmid: Pmw172

Molecule: Testin
Chain: E, F, G, H
Fragment: 3rd Lim Domain, Residues 357-421
Synonym: Tess, Tes
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Fb810
Expression_system_plasmid: Pmw172
symmetry Space Group: P 21 21 2
R_factor 0.199 R_Free 0.259
crystal
cell
length a length b length c angle alpha angle beta angle gamma
66.548 292.927 37.126 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.35 Å
ligand ZN enzyme
note 2IYB is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
H, F, G, E


Primary referenceTes, a Specific Mena Interacting Partner, Breaks the Rules for EVH1 Binding., Boeda B, Briggs DC, Higgins T, Garvalov BK, Fadden AJ, McDonald NQ, Way M, Mol Cell. 2007 Dec 28;28(6):1071-82. PMID:18158903
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (125 Kb) [Save to disk]
  • Biological Unit Coordinates (2iyb.pdb1.gz) 32 Kb
  • Biological Unit Coordinates (2iyb.pdb2.gz) 32 Kb
  • Biological Unit Coordinates (2iyb.pdb3.gz) 30 Kb
  • Biological Unit Coordinates (2iyb.pdb4.gz) 31 Kb
  • LPC: Ligand-Protein Contacts for 2IYB
  • CSU: Contacts of Structural Units for 2IYB
  • Likely Quarternary Molecular Structure file(s) for 2IYB
  • Retrieve 2IYB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2IYB from S2C, [Save to disk]
  • View 2IYB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2IYB
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2IYB, from MSDmotif at EBI
  • Fold representative 2iyb from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2iyb] [2iyb_D] [2iyb_A] [2iyb_E] [2iyb_G] [2iyb_F] [2iyb_C] [2iyb_B] [2iyb_H]
  • SWISS-PROT database: [Q8N8S7] [Q9UGI8]
  • Domain organization of [ENAH_HUMAN] [TES_HUMAN] by SWISSPFAM
  • Domains found in 2IYB: [LIM] [RanBD] [WH1 ] by SMART
  • Other resources with information on 2IYB
  • Community annotation for 2IYB at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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