2J3T Transport date Aug 23, 2006
title The Crystal Structure Of The Bet3-Trs33-Bet5-Trs23 Complex.
authors Y.Kim, B.Oh
compound source
Molecule: Trafficking Protein Particle Complex Subunit 3
Chain: A
Synonym: Bet3 Homolog
Engineered: Yes
Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_plasmid: Pproexhta, Pet30a

Molecule: Trafficking Protein Particle Complex Subunit 6a
Chain: B
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_plasmid: Pproexhta, Pet30a

Molecule: Trafficking Protein Particle Complex Subunit 1
Chain: C
Engineered: Yes

Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_plasmid: Pproexhta, Pet30a

Molecule: Trafficking Protein Particle Complex Subunit 4
Chain: D
Synonym: Synbindin, Trs23 Homolog, Hematopoietic Stemproge Stemprogenitor Cell Protein 172;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_plasmid: Pproexhta, Pet30a
symmetry Space Group: P 21 21 21
R_factor 0.2074 R_Free 0.2487
crystal
cell
length a length b length c angle alpha angle beta angle gamma
57.602 66.336 200.808 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.4 Å
ligand PLM enzyme
note 2J3T is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A


B
  • COPII vesicle coating

  • C


    D


    Primary referenceThe architecture of the multisubunit TRAPP I complex suggests a model for vesicle tethering., Kim YG, Raunser S, Munger C, Wagner J, Song YL, Cygler M, Walz T, Oh BH, Sacher M, Cell. 2006 Nov 17;127(4):817-30. PMID:17110339
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (115 Kb) [Save to disk]
  • Biological Unit Coordinates (2j3t.pdb1.gz) 110 Kb
  • LPC: Ligand-Protein Contacts for 2J3T
  • CSU: Contacts of Structural Units for 2J3T
  • Likely Quarternary Molecular Structure file(s) for 2J3T
  • Structure Factors (270 Kb)
  • Retrieve 2J3T in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2J3T from S2C, [Save to disk]
  • Re-refined 2j3t structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2J3T in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2J3T
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2J3T, from MSDmotif at EBI
  • Fold representative 2j3t from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2j3t] [2j3t_A] [2j3t_D] [2j3t_C] [2j3t_B]
  • SWISS-PROT database: [O75865] [Q5NCF2] [O55013] [Q9Y296]
  • Domain organization of [TPC6A_HUMAN] [TPPC1_MOUSE] [TPPC3_MOUSE] [TPPC4_HUMAN] by SWISSPFAM
  • Domain found in 2J3T: [Sybindin ] by SMART
  • Other resources with information on 2J3T
  • Community annotation for 2J3T at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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