2JOP Immune System date Mar 19, 2007
title Solution Structure Of The N-Terminal Extracellular Domain Of Lymphocyte Receptor Cd5 (Cd5 Domain 1)
authors A.Garza-Garcia, R.Harris, D.Esposito, P.C.Driscoll
compound source
Molecule: T-Cell Surface Glycoprotein Cd5
Chain: A
Fragment: Residues 25-134
Synonym: Lymphocyte Antigen T1leu- 1
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cd5, Leu1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Vector
Expression_system_vector: Pet15b
methodSolution NMR

Primary referenceThree-dimensional solution structure and conformational plasticity of the N-terminal scavenger receptor cysteine-rich domain of human CD5., Garza-Garcia A, Esposito D, Rieping W, Harris R, Briggs C, Brown MH, Driscoll PC, J Mol Biol. 2008 Apr 18;378(1):129-44. Epub 2008 Feb 12. PMID:18339402
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1438 Kb) [Save to disk]
  • Biological Unit Coordinates (2jop.pdb1.gz) 30 Kb
  • CSU: Contacts of Structural Units for 2JOP
  • Original NMR restraints for 2JOP from PDB
  • Retrieve 2JOP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2JOP from S2C, [Save to disk]
  • View 2JOP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2JOP
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2JOP, from MSDmotif at EBI
  • Fold representative 2jop from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2jop_A] [2jop]
  • SWISS-PROT database: [P06127]
  • Domain organization of [CD5_HUMAN] by SWISSPFAM
  • Domain found in 2JOP: [SR ] by SMART
  • Other resources with information on 2JOP
  • Community annotation for 2JOP at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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