2JSN Protein Transport date Jul 10, 2007
title Solution Structure Of The Atypical Pdz-Like Domain Of Synbin
authors Y.Feng, S.Fan, W.Gong, B.Xia
compound source
Molecule: Trafficking Protein Particle Complex Subunit 4
Chain: A
Fragment: Sequence Database Residues 19-106
Synonym: Synbindin, Trs23 Homolog, Hematopoietic Stemproge Protein 172;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Trappc4, Sbdn
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Vector
Expression_system_vector: Pet28
methodSolution NMR
Primary referenceSolution structure of synbindin atypical PDZ domain and interaction with syndecan-2., Fan S, Feng Y, Wei Z, Xia B, Gong W, Protein Pept Lett. 2009;16(2):189-95. PMID:19200043
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (505 Kb) [Save to disk]
  • Biological Unit Coordinates (2jsn.pdb1.gz) 26 Kb
  • CSU: Contacts of Structural Units for 2JSN
  • Original NMR restraints for 2JSN from PDB
  • Retrieve 2JSN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2JSN from S2C, [Save to disk]
  • View 2JSN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2JSN
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2JSN, from MSDmotif at EBI
  • Fold representative 2jsn from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2jsn] [2jsn_A]
  • SWISS-PROT database: [Q9Y296]
  • Domain organization of [TPPC4_HUMAN] by SWISSPFAM
  • Other resources with information on 2JSN
  • Community annotation for 2JSN at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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