2JV0 Transcription date Sep 10, 2007
title Set Domain Of Riz1 Tumor Suppressor (Prdm2)
authors K.Briknarova
compound source
Molecule: Pr Domain Zinc Finger Protein 2
Chain: A
Fragment: Set Domain Residues 1-161
Synonym: Pr Domain-Containing Protein 2, Retinoblastoma Pro Interacting Zinc Finger Protein, Zinc Finger Protein Riz, M Protein, Mtb-Zf, Gata-3-Binding Protein G3b;
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Prdm2, Riz
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Vector
Expression_system_vector: Pkg-Pbr
methodSolution NMR
ligand IAS enzyme
Primary referenceStructural studies of the SET domain from RIZ1 tumor suppressor., Briknarova K, Zhou X, Satterthwait A, Hoyt DW, Ely KR, Huang S, Biochem Biophys Res Commun. 2008 Feb 15;366(3):807-13. Epub 2007 Dec 17. PMID:18082620
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (695 Kb) [Save to disk]
  • Biological Unit Coordinates (2jv0.pdb1.gz) 44 Kb
  • LPC: Ligand-Protein Contacts for 2JV0
  • CSU: Contacts of Structural Units for 2JV0
  • Retrieve 2JV0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2JV0 from S2C, [Save to disk]
  • View 2JV0 in 3D
  • Proteopedia, because life has more than 2D.
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  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2JV0
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2JV0, from MSDmotif at EBI
  • Fold representative 2jv0 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2jv0] [2jv0_A]
  • SWISS-PROT database: [Q13029]
  • Domain organization of [PRDM2_HUMAN] by SWISSPFAM
  • Domain found in 2JV0: [SET ] by SMART
  • Other resources with information on 2JV0
  • Community annotation for 2JV0 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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