2JY7 Protein Binding date Dec 07, 2007
title Nmr Structure Of The Ubiquitin Associated (Uba) Domain Of P6 (Sqstm1). Rdc Refined
authors J.E.Long, R.Layfield, M.S.Searle
compound source
Molecule: Ubiquitin-Binding Protein P62
Chain: A
Fragment: Uba Domain
Synonym: Sequestosome-1, Phosphotyrosine-Independent Ligand Lck Sh2 Domain Of 62 Kda, Ebi3-Associated Protein Of 60 Kda Ebiap;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Sqstm1, Orca, Osil
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21
Expression_system_variant: (De3)
Expression_system_vector_type: Vector
Expression_system_vector: Pgex-4t-1
methodSolution NMR
Primary referenceUbiquitin Recognition by the Ubiquitin-associated Domain of p62 Involves a Novel Conformational Switch., Long J, Gallagher TR, Cavey JR, Sheppard PW, Ralston SH, Layfield R, Searle MS, J Biol Chem. 2008 Feb 29;283(9):5427-5440. Epub 2007 Dec 14. PMID:18083707
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (399 Kb) [Save to disk]
  • Biological Unit Coordinates (2jy7.pdb1.gz) 14 Kb
  • CSU: Contacts of Structural Units for 2JY7
  • Original NMR restraints for 2JY7 from PDB
  • Retrieve 2JY7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2JY7 from S2C, [Save to disk]
  • View 2JY7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2JY7
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2JY7, from MSDmotif at EBI
  • Fold representative 2jy7 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2jy7] [2jy7_A]
  • SWISS-PROT database: [Q13501]
  • Domain organization of [SQSTM_HUMAN] by SWISSPFAM
  • Domain found in 2JY7: [UBA ] by SMART
  • Other resources with information on 2JY7
  • Community annotation for 2JY7 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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