2K2O Membrane Protein date Apr 07, 2008
title Solution Structure Of The Inner Dysf Domain Of Human Myoferl
authors P.Patel, R.Harris, N.Keep, P.Driscoll
compound source
Molecule: Myoferlin
Chain: A
Fragment: Inner Dysf Domain (Unp Residues 923-1040)
Synonym: Fer-1-Like Protein 3
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Gene: Fer1l3, Kiaa1207, Myof
Expression_system: Escherichia Coli
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_vector: Pet-151d Topo
methodSolution NMR

Primary referenceSolution structure of the inner DysF domain of myoferlin and implications for limb girdle muscular dystrophy type 2b., Patel P, Harris R, Geddes SM, Strehle EM, Watson JD, Bashir R, Bushby K, Driscoll PC, Keep NH, J Mol Biol. 2008 Jun 20;379(5):981-90. Epub 2008 Apr 26. PMID:18495154
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (651 Kb) [Save to disk]
  • Biological Unit Coordinates (2k2o.pdb1.gz) 33 Kb
  • CSU: Contacts of Structural Units for 2K2O
  • Original NMR restraints for 2K2O from PDB
  • Retrieve 2K2O in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2K2O from S2C, [Save to disk]
  • View 2K2O in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2K2O
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2K2O, from MSDmotif at EBI
  • Fold representative 2k2o from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2k2o_A] [2k2o]
  • SWISS-PROT database: [Q9NZM1]
  • Domain organization of [MYOF_HUMAN] by SWISSPFAM
  • Domains found in 2K2O: [DysFC] [DysFN ] by SMART
  • Other resources with information on 2K2O
  • Community annotation for 2K2O at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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