2KAP Signaling Protein date Nov 12, 2008
title Solution Structure Of Dlc1-Sam
authors S.Yang, D.Yang
compound source
Molecule: Rho Gtpase-Activating Protein 7
Chain: A
Fragment: Sterile Alpha Motif (Sam) Domain, Unp Residues 17-76;
Synonym: Rho-Type Gtpase-Activating Protein 7, Deleted In Liver Cancer 1 Protein, Dlc-1, Star-Related Lipid Transfer Protein 12, Start Domain-Containing Protein 12, Stard12, Hp Protein;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Dlc1
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Vector
Expression_system_vector: Pet32a-Derived
methodSolution NMR

Primary referenceCharacterization of DLC1-SAM equilibrium unfolding at the amino acid residue level., Yang S, Noble CG, Yang D, Biochemistry. 2009 May 19;48(19):4040-9. PMID:19317456
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (166 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 2KAP
  • Original NMR restraints for 2KAP from PDB
  • Retrieve 2KAP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2KAP from S2C, [Save to disk]
  • View 2KAP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2KAP
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2KAP, from MSDmotif at EBI
  • Fold representative 2kap from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2kap_A] [2kap]
  • SWISS-PROT database: [Q96QB1]
  • Domain organization of [RHG07_HUMAN] by SWISSPFAM
  • Other resources with information on 2KAP
  • Community annotation for 2KAP at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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