2KMZ Apoptosis date Aug 10, 2009
title Nmr Structure Of Hfn14
authors M.Pellegrini, L.Willen, M.Perroud, D.Krushinskie, K.Strauch, H.Cu Y.Sun, E.S.Day, P.Schneider, T.S.Zheng
compound source
Molecule: Tumor Necrosis Factor Receptor Superfamily Member
Chain: A
Fragment: Crd, Residues 28-80
Synonym: Fibroblast Growth Factor-Inducible Immediate-Early Protein 14, Fgf-Inducible 14, Tweak-Receptor, Tweakr;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Fn14, Tnfrsf12a
Expression_system: Pichia Pastoris
Expression_system_taxid: 4922
methodSolution NMR
note 2KMZ is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure of the extracellular domains of human and Xenopus Fn14: implications in the evolution of TWEAK and Fn14 interactions., Pellegrini M, Willen L, Perroud M, Krushinskie D, Strauch K, Cuervo H, Day ES, Schneider P, Zheng TS, FEBS J. 2013 Feb 25. doi: 10.1111/febs.12206. PMID:23438059
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (252 Kb) [Save to disk]
  • Biological Unit Coordinates (2kmz.pdb1.gz) 13 Kb
  • CSU: Contacts of Structural Units for 2KMZ
  • Original NMR restraints for 2KMZ from PDB
  • Retrieve 2KMZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2KMZ from S2C, [Save to disk]
  • View 2KMZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2KMZ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2KMZ, from MSDmotif at EBI
  • Fold representative 2kmz from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2kmz] [2kmz_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 2KMZ
  • Community annotation for 2KMZ at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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