2KYT Hydrolase date Jun 08, 2010
title Solution Structure Of The H-Rev107 N-Terminal Domain
authors X.Ren, B.Xia
compound source
Molecule: Group Xvi Phospholipase A2
Chain: A
Fragment: Unp Residues 1-125
Synonym: Adipose-Specific Phospholipase A2, Adpla, Hras-Lik Suppressor 3, H-Rev 107 Protein Homolog, Hrev107-3, Renal C Antigen Ny-Ren-65;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Pla2g16, Hrasls3, Hrev107
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Vector
Expression_system_vector: Pet24a
methodSolution NMR
enzyme Hydrolase E.C. BRENDA
Primary referenceSolution structure of the N-terminal catalytic domain of human H-REV107--a novel circular permutated NlpC/P60 domain., Ren X, Lin J, Jin C, Xia B, FEBS Lett. 2010 Oct 8;584(19):4222-6. Epub 2010 Sep 17. PMID:20837014
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (661 Kb) [Save to disk]
  • Biological Unit Coordinates (2kyt.pdb1.gz) 34 Kb
  • CSU: Contacts of Structural Units for 2KYT
  • Original NMR restraints for 2KYT from PDB
  • Retrieve 2KYT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2KYT from S2C, [Save to disk]
  • View 2KYT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2KYT
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2KYT, from MSDmotif at EBI
  • Fold representative 2kyt from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2kyt_A] [2kyt]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 2KYT
  • Community annotation for 2KYT at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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