2L2L Transferase date Aug 20, 2010
title Solution Structure Of The Coiled-Coil Complex Between Mbd2 A P66alpha
authors D.C.Williams Jr., N.Scarsdale Jr.
compound source
Molecule: Transcriptional Repressor P66-Alpha
Chain: A
Fragment: P66-Alpha Coiled-Coil Domain (Unp Residues 137-17
Synonym: Hp66alpha, Gata Zinc Finger Domain-Containing Prot
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Gatad2a
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet32a

Molecule: Methyl-Cpg-Binding Domain Protein 2
Chain: B
Fragment: Mbd2 Coiled-Coil Domain (Unp Residues 360-393)
Synonym: Methyl-Cpg-Binding Protein Mbd2, Demethylase, Dmta
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Mbd2
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet32a
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referencep66{alpha}-MBD2 coiled-coil interaction and recruitment of Mi-2 are critical for globin gene silencing by the MBD2-NuRD complex., Gnanapragasam MN, Scarsdale JN, Amaya ML, Webb HD, Desai MA, Walavalkar NM, Wang SZ, Zhu SZ, Ginder GD, Williams DC Jr, Proc Natl Acad Sci U S A. 2011 Apr 13. PMID:21490301
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (456 Kb) [Save to disk]
  • Biological Unit Coordinates (2l2l.pdb1.gz) 23 Kb
  • CSU: Contacts of Structural Units for 2L2L
  • Original NMR restraints for 2L2L from PDB
  • Retrieve 2L2L in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2L2L from S2C, [Save to disk]
  • View 2L2L in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2L2L
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2L2L, from MSDmotif at EBI
  • Fold representative 2l2l from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2l2l_A] [2l2l_B] [2l2l]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 2L2L
  • Community annotation for 2L2L at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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