2LGF Metal Binding Protein date Jul 25, 2011
title Solution Structure Of Ca2+Calmodulin Complexed With A Pepti Representing The Calmodulin-Binding Domain Of L-Selectin
authors J.L.Gifford, H.Ishida, H.J.Vogel
compound source
Molecule: Calmodulin
Chain: A
Fragment: Sequence Database Residues 4-149
Synonym: Cam
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Calm1, Calm, Cam, Cam1, Calm2, Cam2, Camb, Calm3, Cal Cam3, Camc, Camiii;
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector: Pet30b(+)

Molecule: L-Selectin
Chain: B
Fragment: Sequence Database Residues 349-363
Synonym: Cd62 Antigen-Like Family Member L, Leukocyte Adhes Molecule 1, Lam-1, Leukocyte Surface Antigen Leu-8, Leukocy Endothelial Cell Adhesion Molecule 1, Lecam1, Lymph Node Ho Receptor, Tq1, Gp90-Mel;
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
methodSolution NMR
ligand CA enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural Insights into Calmodulin-regulated L-selectin Ectodomain Shedding., Gifford JL, Ishida H, Vogel HJ, J Biol Chem. 2012 Aug 3;287(32):26513-27. Epub 2012 Jun 18. PMID:22711531
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (47 Kb) [Save to disk]
  • Biological Unit Coordinates (2lgf.pdb1.gz) 43 Kb
  • LPC: Ligand-Protein Contacts for 2LGF
  • CSU: Contacts of Structural Units for 2LGF
  • Original NMR restraints for 2LGF from PDB
  • Retrieve 2LGF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2LGF from S2C, [Save to disk]
  • View 2LGF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2LGF
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2LGF, from MSDmotif at EBI
  • Fold representative 2lgf from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2lgf] [2lgf_A] [2lgf_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2LGF: [EFh ] by SMART
  • Other resources with information on 2LGF
  • Community annotation for 2LGF at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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