2LRR Hydrolase date Apr 12, 2012
title Solution Structure Of The R3h Domain From Human Smubp-2 In C With 2'-Deoxyguanosine-5'-Monophosphate
authors K.Jaudzems, D.Zhulenkovs, G.Otting, E.Liepinsh
compound source
Molecule: Dna-Binding Protein Smubp-2
Chain: A
Fragment: R3h Domain Residues 711-786
Synonym: Atp-Dependent Helicase Ighmbp2, Glial Factor 1, Gf Immunoglobulin Mu-Binding Protein 2;
Ec: 3.6.4.12, 3.6.4.13
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ighmbp2, Smbp2, Smubp-2, Smubp2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: M15
Expression_system_vector: Pqe60
methodSolution NMR
ligand DGP enzyme Hydrolase E.C.3.6.4.12 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural Basis for 5'-End-Specific Recognition of Single-Stranded DNA by the R3H Domain from Human Smubp-2., Jaudzems K, Jia X, Yagi H, Zhulenkovs D, Graham B, Otting G, Liepinsh E, J Mol Biol. 2012 Sep 18. pii: S0022-2836(12)00760-7. doi:, 10.1016/j.jmb.2012.09.010. PMID:22999958
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (383 Kb) [Save to disk]
  • Biological Unit Coordinates (2lrr.pdb1.gz) 20 Kb
  • LPC: Ligand-Protein Contacts for 2LRR
  • CSU: Contacts of Structural Units for 2LRR
  • Original NMR restraints for 2LRR from PDB
  • Retrieve 2LRR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2LRR from S2C, [Save to disk]
  • View 2LRR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2LRR
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2LRR, from MSDmotif at EBI
  • Fold representative 2lrr from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2lrr_A] [2lrr]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2LRR: [R3H ] by SMART
  • Other resources with information on 2LRR
  • Community annotation for 2LRR at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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