2LSP Protein Binding date May 03, 2012
title Solution Structures Of Brd4 Second Bromodomain With Nf-Kb-K3 Peptide
authors G.Zhang, R.Liu, Y.Zhong, A.N.Plotnikov, W.Zhang, E.Rusinova, G.Ger Nevarro, N.Moshkina, J.Joshua, P.Y.Chuang, M.Ohlmeyer, J.He, M.M
compound source
Molecule: Nf-Kb-K310ac Peptide
Chain: A
Engineered: Yes
Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Bromodomain-Containing Protein 4
Chain: B
Fragment: Second Bromodomain
Synonym: Protein Hunk1
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Brd4, Hunk1
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
methodSolution NMR
ligand ALY enzyme
Primary referenceDown-regulation of NF-kappaB Transcriptional Activity in HIV-associated Kidney Disease by BRD4 Inhibition., Zhang G, Liu R, Zhong Y, Plotnikov AN, Zhang W, Zeng L, Rusinova E, Gerona-Nevarro G, Moshkina N, Joshua J, Chuang PY, Ohlmeyer M, He JC, Zhou MM, J Biol Chem. 2012 Aug 17;287(34):28840-51. Epub 2012 May 29. PMID:22645123
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (764 Kb) [Save to disk]
  • Biological Unit Coordinates (2lsp.pdb1.gz) 39 Kb
  • LPC: Ligand-Protein Contacts for 2LSP
  • CSU: Contacts of Structural Units for 2LSP
  • Original NMR restraints for 2LSP from PDB
  • Retrieve 2LSP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2LSP from S2C, [Save to disk]
  • View 2LSP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2LSP
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2LSP, from MSDmotif at EBI
  • Fold representative 2lsp from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2lsp] [2lsp_B] [2lsp_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2LSP: [BROMO ] by SMART
  • Other resources with information on 2LSP
  • Community annotation for 2LSP at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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