2M10 Hydrolase date Nov 09, 2012
title Trans Form Of A Photoswitchable Pdz Domain Crosslinked With Azobenzene Derivative
authors R.Walser
compound source
Molecule: Tyrosine-Protein Phosphatase Non-Receptor Type 13
Chain: A
Fragment: Pdz 2 Domain Residues 1361-1456
Synonym: Fas-Associated Protein-Tyrosine Phosphatase 1, Fap Bas, Protein-Tyrosine Phosphatase 1e, Ptp-E1, Hptpe1, Prote Tyrosine Phosphatase Ptpl1;
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ptpn13, Pnp1, Ptp1e, Ptpl1
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21 (De3)
Expression_system_vector: Pet30a(+)
methodSolution NMR
ligand 33B enzyme Hydrolase E.C. BRENDA
Primary referenceKinetic response of a photoperturbed allosteric protein., Buchli B, Waldauer SA, Walser R, Donten ML, Pfister R, Blochliger N, Steiner S, Caflisch A, Zerbe O, Hamm P, Proc Natl Acad Sci U S A. 2013 Jul 1. PMID:23818626
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (568 Kb) [Save to disk]
  • Biological Unit Coordinates (2m10.pdb1.gz) 29 Kb
  • LPC: Ligand-Protein Contacts for 2M10
  • CSU: Contacts of Structural Units for 2M10
  • Original NMR restraints for 2M10 from PDB
  • Retrieve 2M10 in mmCIF format [Save to disk]
  • View 2M10 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2M10
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2M10, from MSDmotif at EBI
  • Fold representative 2m10 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2m10] [2m10_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2M10: [PDZ ] by SMART
  • Other resources with information on 2M10
  • Community annotation for 2M10 at PDBWiki (http://pdbwiki.org)

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