2MJ8 Protein Binding date Dec 28, 2013
title Solution Structure Of Cdyl2 Chromodomain
authors S.Qin, S.Houliston, C.H.Arrowsmith, A.M.Edwards, H.Wu, J.Min, Stru Genomics Consortium (Sgc)
compound source
Molecule: Chromodomain Y-Like Protein 2
Chain: A
Fragment: Unp Residues 2-64
Synonym: Cdy-Like 2
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cdyl2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector: Pet28-Mhl
methodSolution NMR
Primary referenceStructural Basis for the Binding Selectivity of Human CDY Chromodomains., Dong C, Liu Y, Lyu TJ, Beldar S, Lamb KN, Tempel W, Li Y, Li Z, James LI, Qin S, Wang Y, Min J, Cell Chem Biol. 2020 May 26. pii: S2451-9456(20)30153-7. doi:, 10.1016/j.chembiol.2020.05.007. PMID:32470319
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (356 Kb) [Save to disk]
  • Biological Unit Coordinates (2mj8.pdb1.gz) 18 Kb
  • CSU: Contacts of Structural Units for 2MJ8
  • Original NMR restraints for 2MJ8 from PDB
  • Retrieve 2MJ8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2MJ8 from S2C, [Save to disk]
  • View 2MJ8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2MJ8
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2MJ8, from MSDmotif at EBI
  • Fold representative 2mj8 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2mj8_A] [2mj8]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2MJ8: [CHROMO ] by SMART
  • Other resources with information on 2MJ8
  • Community annotation for 2MJ8 at PDBWiki (http://pdbwiki.org)

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