2MP2 Protein Binding date May 09, 2014
title Solution Structure Of Sumo Dimer In Complex With Sim2-3 From
authors Y.Xu, A.Plechanovov, P.Simpson, J.Marchant, O.Leidecker, K.Sebast R.T.Hay, S.J.Matthews
compound source
Molecule: Small Ubiquitin-Related Modifier 3
Chain: A
Fragment: Unp Residues 12-92
Synonym: Sumo-3, Smt3 Homolog 1, Sumo-2, Ubiquitin-Like Pro Smt3b, Smt3b;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Smt3b, Smt3h1, Sumo3
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Phis-Tev-30a

Molecule: Small Ubiquitin-Related Modifier 3
Chain: B
Fragment: Unp Residues 2-90
Synonym: Sumo-3, Smt3 Homolog 1, Sumo-2, Ubiquitin-Like Pro Smt3b, Smt3b;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Smt3b, Smt3h1, Sumo3
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Phis-Tev-30a

Molecule: E3 Ubiquitin-Protein Ligase Rnf4
Chain: C
Fragment: Unp Residues 45-69
Synonym: Ring Finger Protein 4
Engineered: Yes

Synthetic: Yes
Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
methodSolution NMR
Primary referenceStructural insight into SUMO chain recognition and manipulation by the ubiquitin ligase RNF4., Xu Y, Plechanovova A, Simpson P, Marchant J, Leidecker O, Kraatz S, Hay RT, Matthews SJ, Nat Commun. 2014 Jun 27;5:4217. doi: 10.1038/ncomms5217. PMID:24969970
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (522 Kb) [Save to disk]
  • Biological Unit Coordinates (2mp2.pdb1.gz) 53 Kb
  • CSU: Contacts of Structural Units for 2MP2
  • Original NMR restraints for 2MP2 from PDB
  • Retrieve 2MP2 in mmCIF format [Save to disk]
  • View 2MP2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2MP2
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2MP2, from MSDmotif at EBI
  • Fold representative 2mp2 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2mp2_A] [2mp2_B] [2mp2_C] [2mp2]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2MP2: [UBQ ] by SMART
  • Other resources with information on 2MP2
  • Community annotation for 2MP2 at PDBWiki (http://pdbwiki.org)

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