2MYM Protein Binding date Jan 27, 2015
title Cullin3 - Btb Interface: A Novel Target For Stapled Peptides
authors L.Russo, M.Palmieri, G.Malgieri
compound source
Molecule: Cullin-3
Chain: A
Fragment: Unp Residues 49-68
Synonym: Cul-3
Engineered: Yes
Synthetic: Yes
Organism_scientific: Human
Organism_common: Homo Sapiens
Organism_taxid: 9606
Other_details: Peptide Was Obtained On Solid Phase By Fmoc
methodSolution NMR
ligand MK8 enzyme
Primary referenceCullin3 - BTB Interface: A Novel Target for Stapled Peptides., de Paola I, Pirone L, Palmieri M, Balasco N, Esposito L, Russo L, Mazza D, Di Marcotullio L, Di Gaetano S, Malgieri G, Vitagliano L, Pedone E, Zaccaro L, PLoS One. 2015 Apr 7;10(4):e0121149. doi: 10.1371/journal.pone.0121149., eCollection 2015. PMID:25848797
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (95 Kb) [Save to disk]
  • Biological Unit Coordinates (2mym.pdb1.gz) 7 Kb
  • LPC: Ligand-Protein Contacts for 2MYM
  • CSU: Contacts of Structural Units for 2MYM
  • Original NMR restraints for 2MYM from PDB
  • Retrieve 2MYM in mmCIF format [Save to disk]
  • View 2MYM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2MYM
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2MYM, from MSDmotif at EBI
  • Fold representative 2mym from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2mym_A] [2mym]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 2MYM
  • Community annotation for 2MYM at PDBWiki (http://pdbwiki.org)

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