2N6F Heparin-Binding Protein date Aug 20, 2015
title Structure Of Pleiotrophin
authors E.O.Ryan, D.Shen, X.Wang
compound source
Molecule: Pleiotrophin
Chain: A
Fragment: Unp Residues 33-168
Synonym: Ptn, Heparin-Binding Brain Mitogen, Hbbm, Heparin- Growth Factor 8, Hbgf-8, Heparin-Binding Growth-Associated Hb-Gam, Heparin-Binding Neurite Outgrowth-Promoting Factor Osteoblast-Specific Factor 1, Osf-1;
Engineered: Yes
Other_details: Two Domains Connected By A Flexible Linker
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hbnf1, Negf1, Ptn
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Origami Bl21(De3)
Expression_system_vector: Pet-15b
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A
  • protein phosphatase inhibito...
  • receptor clustering

  • Primary referenceStructural studies reveal an important role for the pleiotrophin C-terminus in mediating interactions with chondroitin sulfate., Ryan E, Shen D, Wang X, FEBS J. 2016 Apr;283(8):1488-503. doi: 10.1111/febs.13686. Epub 2016 Mar 6. PMID:26896299
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (367 Kb) [Save to disk]
  • Biological Unit Coordinates (2n6f.pdb1.gz) 37 Kb
  • CSU: Contacts of Structural Units for 2N6F
  • Original NMR restraints for 2N6F from PDB
  • Retrieve 2N6F in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2N6F from S2C, [Save to disk]
  • View 2N6F in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2N6F
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 2n6f from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2n6f] [2n6f_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2N6F: [PTN ] by SMART
  • Other resources with information on 2N6F
  • Community annotation for 2N6F at PDBWiki (http://pdbwiki.org)

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