2N82 solution structure of the complex of microRNA 20b pre-element with Rbfox RRM date
authors Yang, F., Chen, Y., Varani, G.
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
Gene
Ontology
ChainFunctionProcessComponent
B


Primary referenceRbfox proteins regulate microRNA biogenesis by sequence-specific binding to their precursors and target downstream Dicer., Chen Y, Zubovic L, Yang F, Godin K, Pavelitz T, Castellanos J, Macchi P, Varani G, Nucleic Acids Res. 2016 Mar 21. pii: gkw177. PMID:27001519
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (783 Kb) [Save to disk]
  • Biological Unit Coordinates (2n82.pdb1.gz) 40 Kb
  • CSU: Contacts of Structural Units for 2N82
  • Original NMR restraints for 2N82 from PDB
  • Retrieve 2N82 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2N82 from S2C, [Save to disk]
  • View 2N82 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2N82
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2n82_B] [2n82_A] [2n82]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2N82: [RRM ] by SMART
  • Other resources with information on 2N82
  • Community annotation for 2N82 at PDBWiki (http://pdbwiki.org)

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