2NL9	Apoptosis	date	Oct 19, 2006
title	Crystal Structure Of The Mcl-1:Bim Bh3 Complex
authors	P.E.Czabotar, P.M.Colman
compound		source
Molecule: Fusion Protein Consisting Of Induced Myeloid Leuk Differentiation Protein Mcl-1 Homolog; Chain: A Fragment: Residues 171-208 And Residues 209-327 Engineered: Yes		Organism_scientific: Mus Musculus, Homo Sapiens Organism_common: Mouse, Human Organism_taxid: 10090, 9606 Gene: Mcl1 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21 (De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pgex-6p3
Molecule: Bcl-2-Like Protein 11 Chain: B Synonym: Bcl2-Interacting Mediator Of Cell Death		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606
symmetry	Space Group: I 2 2 2	R_factor 0.173 R_Free 0.203
crystal cell	length a length b length c angle alpha angle beta angle gamma 52.380 70.080 117.180 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.55 Å
ligand	CL, MSE, ZN	enzyme
note	2NL9 is a representative structure
Gene Ontology	Chain Function Process Component A
Primary reference	Structural insights into the degradation of Mcl-1 induced by BH3 domains., Czabotar PE, Lee EF, van Delft MF, Day CL, Smith BJ, Huang DC, Fairlie WD, Hinds MG, Colman PM, Proc Natl Acad Sci U S A. 2007 Apr 10;104(15):6217-22. Epub 2007 Mar 27. PMID:17389404

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (40 Kb) [Save to disk] Biological Unit Coordinates (2nl9.pdb1.gz) 33 Kb Biological Unit Coordinates (2nl9.pdb2.gz) 127 Kb Biological Unit Coordinates (2nl9.pdb3.gz) 118 Kb LPC: Ligand-Protein Contacts for 2NL9 CSU: Contacts of Structural Units for 2NL9 Likely Quarternary Molecular Structure file(s) for 2NL9 Structure Factors (242 Kb) Retrieve 2NL9 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2NL9 from S2C, [Save to disk] Re-refined 2nl9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2NL9 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2NL9

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2NL9, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2nl9_A] [2nl9] [2nl9_B] SWISS-PROT database: [O43521] [Q07820] [P97287] Belongs to the pro-apoptotic bcl-2-family protein bim (bim) family according to TCDB. Domain organization of [B2L11_HUMAN] [MCL1_HUMAN] [MCL1_MOUSE] by SWISSPFAM Domain found in 2NL9: [BCL ] by SMART

Other resources with information on 2NL9

Community annotation for 2NL9 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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