2NNY Transcription Dna date Oct 24, 2006
title Crystal Structure Of The Ets1 Dimer Dna Complex.
authors E.P.Lamber, G.S.Kachalova, M.Wilmanns
compound source
Molecule: 5'- D(Tapgpapcpapgpgpapapgpcpapcptptpcpcptp Gpgpapg)-3';
Chain: C
Engineered: Yes
Synthetic: Yes

Molecule: 5'- D(Acptpcpcpapgpgpapapgptpgpcptptpcpcptp Gptpcpt)-3';
Chain: D
Engineered: Yes

Synthetic: Yes

Molecule: C-Ets-1 Protein
Chain: A, B
Fragment: Residues 280-441
Synonym: P54
Engineered: Yes
Mutation: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ets1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3) Ril
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Petm10
symmetry Space Group: P 21 21 2
R_factor 0.235 R_Free 0.271
length a length b length c angle alpha angle beta angle gamma
93.556 100.838 69.800 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.58 Å
A, B

Primary referenceRegulation of the transcription factor Ets-1 by DNA-mediated homo-dimerization., Lamber EP, Vanhille L, Textor LC, Kachalova GS, Sieweke MH, Wilmanns M, EMBO J. 2008 Jul 23;27(14):2006-17. Epub 2008 Jun 19. PMID:18566588
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (67 Kb) [Save to disk]
  • Biological Unit Coordinates (2nny.pdb1.gz) 62 Kb
  • CSU: Contacts of Structural Units for 2NNY
  • Likely Quarternary Molecular Structure file(s) for 2NNY
  • Structure Factors (152 Kb)
  • Retrieve 2NNY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2NNY from S2C, [Save to disk]
  • Re-refined 2nny structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2NNY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2NNY
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2NNY, from MSDmotif at EBI
  • Fold representative 2nny from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2nny_C] [2nny_B] [2nny_D] [2nny_A] [2nny]
  • SWISS-PROT database: [P14921]
  • Domain organization of [ETS1_HUMAN] by SWISSPFAM
  • Domain found in 2NNY: [ETS ] by SMART
  • Other resources with information on 2NNY
  • Community annotation for 2NNY at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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