2NTE Antitumor Protein date Nov 07, 2006
title Crystal Structure Of The Bard1 Brct Domains
authors G.Birrane, A.K.Varma, A.Soni, J.A.A.Ladias
compound source
Molecule: Brca1-Associated Ring Domain Protein 1
Chain: A, B
Fragment: Brct Domain
Synonym: Bard-1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Bard1
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-6h
symmetry Space Group: P 21 21 21
R_factor 0.196 R_Free 0.247
length a length b length c angle alpha angle beta angle gamma
57.441 75.797 116.570 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand CL, EDO, SO4 enzyme
Primary referenceCrystal structure of the BARD1 BRCT domains., Birrane G, Varma AK, Soni A, Ladias JA, Biochemistry. 2007 Jul 3;46(26):7706-12. Epub 2007 Jun 6. PMID:17550235
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (80 Kb) [Save to disk]
  • Biological Unit Coordinates (2nte.pdb1.gz) 38 Kb
  • Biological Unit Coordinates (2nte.pdb2.gz) 37 Kb
  • LPC: Ligand-Protein Contacts for 2NTE
  • CSU: Contacts of Structural Units for 2NTE
  • Likely Quarternary Molecular Structure file(s) for 2NTE
  • Structure Factors (569 Kb)
  • Retrieve 2NTE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2NTE from S2C, [Save to disk]
  • Re-refined 2nte structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2NTE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2NTE
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2NTE, from MSDmotif at EBI
  • Fold representative 2nte from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2nte] [2nte_B] [2nte_A]
  • SWISS-PROT database: [Q99728]
  • Domain organization of [BARD1_HUMAN] by SWISSPFAM
  • Domain found in 2NTE: [BRCT ] by SMART
  • Other resources with information on 2NTE
  • Community annotation for 2NTE at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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