2NWM Cell Adhesion date Nov 15, 2006
title Solution Structure Of The First Sh3 Domain Of Human Vinexin And Its Interaction With The Peptides From Vinculin
authors J.Zhang, B.Yao, J.Wu, Y.Shi
compound source
Molecule: Vinexin
Chain: A
Fragment: Sh3 Domain
Synonym: Sorbin And Sh3 Domain-Containing Protein 3, Sh3- Containing Adapter Molecule 1, Scam-1;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Vinexin
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet22b(+)
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSolution structure of the first SH3 domain of human vinexin and its interaction with vinculin peptides., Zhang J, Li X, Yao B, Shen W, Sun H, Xu C, Wu J, Shi Y, Biochem Biophys Res Commun. 2007 Jun 15;357(4):931-937. Epub 2007 Apr 17. PMID:17467669
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (325 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 2NWM
  • Original NMR restraints for 2NWM from PDB
  • Retrieve 2NWM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2NWM from S2C, [Save to disk]
  • View 2NWM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2NWM
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2NWM, from MSDmotif at EBI
  • Fold representative 2nwm from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2nwm_A] [2nwm]
  • SWISS-PROT database: [O60504]
  • Domain organization of [VINEX_HUMAN] by SWISSPFAM
  • Domain found in 2NWM: [SH3 ] by SMART
  • Other resources with information on 2NWM
  • Community annotation for 2NWM at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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