2O61 Transcription Dna date Dec 06, 2006
title Crystal Structure Of Nfkb, Irf7, Irf3 Bound To The Interfero Enhancer
authors D.Panne
compound source
Molecule: 36-Mer
Chain: E
Engineered: Yes
Synthetic: Yes

Molecule: 34-Mer
Chain: F
Engineered: Yes

Synthetic: Yes

Molecule: Transcription Factor P65interferon Regulatory Fa 7interferon Regulatory Factor 3 Fusion Protein;
Chain: A
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Nuclear Factor Nf-Kappa-B P105 Subunit
Chain: B
Fragment: Rhr Region
Synonym: Dna-Binding Factor Kbf1, Ebp-1
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Nfkb1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.245 R_Free 0.278
length a length b length c angle alpha angle beta angle gamma
95.222 116.370 134.237 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.80 Å
note 2O61 (Molecule of the Month:pdb122)


Primary referenceAn Atomic Model of the Interferon-beta Enhanceosome., Panne D, Maniatis T, Harrison SC, Cell. 2007 Jun 15;129(6):1111-23. PMID:17574024
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (166 Kb) [Save to disk]
  • Biological Unit Coordinates (2o61.pdb1.gz) 160 Kb
  • CSU: Contacts of Structural Units for 2O61
  • Likely Quarternary Molecular Structure file(s) for 2O61
  • Structure Factors (297 Kb)
  • Retrieve 2O61 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2O61 from S2C, [Save to disk]
  • Re-refined 2o61 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2O61 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2O61
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2O61, from MSDmotif at EBI
  • Fold representative 2o61 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2o61_E] [2o61_B] [2o61_A] [2o61] [2o61_F]
  • SWISS-PROT database: [Q14653] [P19838] [Q04206]
  • Domain organization of [IRF3_HUMAN] [NFKB1_HUMAN] [TF65_HUMAN] by SWISSPFAM
  • Domains found in 2O61: [IPT] [IRF ] by SMART
  • Other resources with information on 2O61
  • Community annotation for 2O61 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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