2OCB Transport Protein date Dec 20, 2006
title Crystal Structure Of Human Rab9b In Complex With A Gtp Analo
authors B.Hong, L.Shen, J.R.Walker, W.Tempel, R.Landry, C.H.Arrowsmith, A.M.Edwards, M.Sundstrom, J.Weigelt, A.Bochkarev, H.Park, Struct Genomics Consortium (Sgc)
compound source
Molecule: Ras-Related Protein Rab-9b
Chain: A
Synonym: Rab-9l, Rab9-Like Protein
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Rab9b, Rab9l
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)Codon Plus
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28alic
symmetry Space Group: P 32 2 1
R_factor 0.214 R_Free 0.253
crystal
cell
length a length b length c angle alpha angle beta angle gamma
70.430 70.430 97.715 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.20 Å
ligand GNP, MG, UNX enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (35 Kb) [Save to disk]
  • Biological Unit Coordinates (2ocb.pdb1.gz) 30 Kb
  • LPC: Ligand-Protein Contacts for 2OCB
  • CSU: Contacts of Structural Units for 2OCB
  • Likely Quarternary Molecular Structure file(s) for 2OCB
  • Structure Factors (212 Kb)
  • Retrieve 2OCB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2OCB from S2C, [Save to disk]
  • Re-refined 2ocb structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2OCB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2OCB
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2OCB, from MSDmotif at EBI
  • Fold representative 2ocb from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2ocb] [2ocb_A]
  • SWISS-PROT database: [Q9NP90]
  • Domain organization of [RAB9B_HUMAN] by SWISSPFAM
  • Domain found in 2OCB: [RAB ] by SMART
  • Other resources with information on 2OCB
  • Community annotation for 2OCB at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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