2OS6 Cell Adhesion date Feb 05, 2007
title Solution Structure Of Larg Pdz Domain In Complex With C- Terminal Octa-Peptide Of Plexin B1
authors J.Liu, H.Huang, Y.Yang
compound source
Molecule: Rho Guanine Nucleotide Exchange Factor 12
Chain: A
Fragment: Pdz Domain
Synonym: Larg Protein, Leukemia-Associated Rhogef
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21 (De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet15b (+)

Molecule: C-Terminal Peptide Of Plexin-B1
Chain: B
Synonym: Semaphorin Receptor Sep
Engineered: Yes

Synthetic: Yes
Other_details: This Sequence Occurs Naturally In Humans
methodSolution NMR
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (491 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 2OS6
  • Original NMR restraints for 2OS6 from PDB
  • Retrieve 2OS6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2OS6 from S2C, [Save to disk]
  • View 2OS6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2OS6
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2OS6, from MSDmotif at EBI
  • Fold representative 2os6 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2os6_B] [2os6_A] [2os6]
  • SWISS-PROT database: [Q9NZN5] [O43157]
  • Domain organization of [ARHGC_HUMAN] [PLXB1_HUMAN] by SWISSPFAM
  • Domain found in 2OS6: [PDZ ] by SMART
  • Other resources with information on 2OS6
  • Community annotation for 2OS6 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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