2OX6 Structural Genomics, Unknown Function date Feb 19, 2007
title Crystal Structure Of Gene Product So3848 From Shewanella One Mr-1
authors R.Zhang, L.Bigelow, S.Giuliani, A.Joachimiak, Midwest Center For Structural Genomics (Mcsg)
compound source
Molecule: Hypothetical Protein So3848
Chain: A, B, C, D
Engineered: Yes
Organism_scientific: Shewanella Oneidensis
Organism_taxid: 211586
Strain: Mr-1
Gene: So_3848
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pdm68
symmetry Space Group: P 21 21 21
R_factor 0.199 R_Free 0.239
crystal
cell
length a length b length c angle alpha angle beta angle gamma
69.068 88.680 117.527 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.70 Å
ligand MG enzyme
Gene SO
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (126 Kb) [Save to disk]
  • Biological Unit Coordinates (2ox6.pdb1.gz) 61 Kb
  • Biological Unit Coordinates (2ox6.pdb2.gz) 60 Kb
  • Biological Unit Coordinates (2ox6.pdb3.gz) 120 Kb
  • LPC: Ligand-Protein Contacts for 2OX6
  • CSU: Contacts of Structural Units for 2OX6
  • Likely Quarternary Molecular Structure file(s) for 2OX6
  • Structure Factors (570 Kb)
  • Retrieve 2OX6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2OX6 from S2C, [Save to disk]
  • Re-refined 2ox6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2OX6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2OX6
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2OX6, from MSDmotif at EBI
  • Fold representative 2ox6 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2ox6_C] [2ox6] [2ox6_D] [2ox6_A] [2ox6_B]
  • SWISS-PROT database: [Q8EAP9]
  • Domain organization of [Q8EAP9_SHEON] by SWISSPFAM
  • Other resources with information on 2OX6
  • Community annotation for 2OX6 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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