2P2C Hydrolase date Mar 07, 2007
title Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein
authors H.Roschitzki Voser, C.Briand, G.Capitani, M.G.Gruetter
compound source
Molecule: Caspase-2
Chain: A, C, E, G, I, K
Fragment: Residues 167-333
Ec: 3.4.22.-
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Strain: Bl21(De3)

Molecule: Caspase-2
Chain: B, D, F, H, J, L
Fragment: Residues 348-452
Ec: 3.4.22.-
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Casp2

Molecule: Caspase-2
Chain: P, Q, R, S, T, U
Ec: 3.4.22.-
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Casp2
symmetry Space Group: P 1 21 1
R_factor 0.262 R_Free 0.305
crystal
cell
length a length b length c angle alpha angle beta angle gamma
58.020 229.210 114.930 90.00 90.11 90.00
method X-Ray Diffractionresolution 3.24 Å
ligand
enzyme Hydrolase E.C.3.4.22 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, K, E, C, I, G


F, J, B, H, D, L


Primary referenceInhibition of Caspase-2 by a Designed Ankyrin Repeat Protein: Specificity, Structure, and Inhibition Mechanism., Schweizer A, Roschitzki-Voser H, Amstutz P, Briand C, Gulotti-Georgieva M, Prenosil E, Binz HK, Capitani G, Baici A, Pluckthun A, Grutter MG, Structure. 2007 May 16;15(5):625-636. PMID:17502107
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (397 Kb) [Save to disk]
  • Biological Unit Coordinates (2p2c.pdb1.gz) 136 Kb
  • Biological Unit Coordinates (2p2c.pdb2.gz) 134 Kb
  • Biological Unit Coordinates (2p2c.pdb3.gz) 132 Kb
  • CSU: Contacts of Structural Units for 2P2C
  • Likely Quarternary Molecular Structure file(s) for 2P2C
  • Structure Factors (397 Kb)
  • Retrieve 2P2C in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2P2C from S2C, [Save to disk]
  • Re-refined 2p2c structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2P2C in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2P2C
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2P2C, from MSDmotif at EBI
  • Fold representative 2p2c from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2p2c_F] [2p2c_H] [2p2c_U] [2p2c] [2p2c_R] [2p2c_E] [2p2c_B] [2p2c_J] [2p2c_L] [2p2c_S] [2p2c_C] [2p2c_P] [2p2c_D] [2p2c_I] [2p2c_T] [2p2c_K] [2p2c_Q] [2p2c_G] [2p2c_A]
  • SWISS-PROT database: [P42575]
  • Domain organization of [CASP2_HUMAN] by SWISSPFAM
  • Domains found in 2P2C: [ANK] [CASc ] by SMART
  • Other resources with information on 2P2C
  • Community annotation for 2P2C at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science