OCA Atlas for 2P5O

2P5O

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

Gene
Ontology

Chain	Function	Process	Component
A, B, D, C	DNA-directed DNA polymerase ... nuclease activity exonuclease activity 3'-5' exonuclease activity

Primary reference

Crystallographic snapshots of a replicative DNA polymerase encountering an abasic site., Hogg M, Wallace SS, Doublie S, EMBO J. 2004 Apr 7;23(7):1483-93. Epub 2004 Apr 1. PMID:15057283

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (565 Kb) [Save to disk]

Biological Unit Coordinates (2p5o.pdb1.gz) 160 Kb

Biological Unit Coordinates (2p5o.pdb2.gz) 145 Kb

Biological Unit Coordinates (2p5o.pdb3.gz) 159 Kb

Biological Unit Coordinates (2p5o.pdb4.gz) 112 Kb

CSU: Contacts of Structural Units for 2P5O

Likely Quarternary Molecular Structure file(s) for 2P5O

Structure Factors (2084 Kb)

Retrieve 2P5O in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 2P5O from S2C, [Save to disk]

Re-refined 2p5o structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2P5O in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2p5o] [2p5o_A] [2p5o_B] [2p5o_C] [2p5o_D] [2p5o_E] [2p5o_F] [2p5o_G] [2p5o_H] [2p5o_I] [2p5o_J] [2p5o_K] [2p5o_L]

SWISS-PROT database: [Q38087]

Domain found in 2P5O: [POLBc ] by SMART

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