2Q3G Structural Genomics date May 30, 2007
title Structure Of The Pdz Domain Of Human Pdlim7 Bound To A C- Terminal Extension From Human Beta-Tropomyosin
authors C.Gileadi, E.Papagrigoriou, J.Elkins, N.Burgess-Brown, E.Salah, O.Gileadi, C.Umeano, G.Bunkoczi, F.Von Delft, J.Uppenberg, A.C.W.Pike, C.H.Arrowsmith, A.Edwards, J.Weigelt, M.Sundstrom, D.A.Doyle, Structural Genomics Consortium (Sgc)
compound source
Molecule: Pdz And Lim Domain Protein 7
Chain: A, B
Synonym: Lim Mineralization Protein, Lmp, Protein Enigma
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Pdlim7
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3) With With Prare Plasmid Encoding Rare Codon Trnas,(Chloramphenicol- Resistant);
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pnic28-Bsa4
symmetry Space Group: P 21 21 21
R_factor 0.131 R_Free 0.157
crystal
cell
length a length b length c angle alpha angle beta angle gamma
46.052 55.404 57.316 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.11 Å
ligand CL, EDO enzyme
note 2Q3G is a representative structure
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (72 Kb) [Save to disk]
  • Biological Unit Coordinates (2q3g.pdb1.gz) 35 Kb
  • Biological Unit Coordinates (2q3g.pdb2.gz) 34 Kb
  • LPC: Ligand-Protein Contacts for 2Q3G
  • CSU: Contacts of Structural Units for 2Q3G
  • Likely Quarternary Molecular Structure file(s) for 2Q3G
  • Structure Factors (803 Kb)
  • Retrieve 2Q3G in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2Q3G from S2C, [Save to disk]
  • Re-refined 2q3g structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2Q3G in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2Q3G
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2Q3G, from MSDmotif at EBI
  • Fold representative 2q3g from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2q3g] [2q3g_A] [2q3g_B]
  • SWISS-PROT database: [Q9NR12]
  • Domain organization of [PDLI7_HUMAN] by SWISSPFAM
  • Domain found in 2Q3G: [PDZ ] by SMART
  • Other resources with information on 2Q3G
  • Community annotation for 2Q3G at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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