2QPW Transcription date Jul 25, 2007
title Methyltransferase Domain Of Human Pr Domain-Containing Protein 2
authors V.V.Lunin, H.Wu, L.Dombrovski, T.Antoshenko, P.Loppnau, J.Weigelt, M.Sundstrom, C.H.Arrowsmith, A.M.Edwards, A.Bochkarev, J.Min, A.N.Plotnikov, Structural Genomics Consortium (Sgc)
compound source
Molecule: Pr Domain Zinc Finger Protein 2
Chain: A
Fragment: Methyltransferase Domain: Residues 2-148
Synonym: Pr Domain-Containing Protein 2, Retinoblastoma Protein-Interacting Zinc Finger Protein, Zinc Finger Protein Riz, Mte-Binding Protein, Mtb-Zf, Gata-3-Binding Protein G3b;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Prdm2, Riz
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Dh5a
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P15mhl
symmetry Space Group: P 21 21 21
R_factor 0.168 R_Free 0.222
crystal
cell
length a length b length c angle alpha angle beta angle gamma
36.462 51.196 70.887 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.79 Å
Primary referenceStructural biology of human H3K9 methyltransferases., Wu H, Min J, Lunin VV, Antoshenko T, Dombrovski L, Zeng H, Allali-Hassani A, Campagna-Slater V, Vedadi M, Arrowsmith CH, Plotnikov AN, Schapira M, PLoS One. 2010 Jan 11;5(1):e8570. PMID:20084102
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (31 Kb) [Save to disk]
  • Biological Unit Coordinates (2qpw.pdb1.gz) 28 Kb
  • CSU: Contacts of Structural Units for 2QPW
  • Likely Quarternary Molecular Structure file(s) for 2QPW
  • Structure Factors (89 Kb)
  • Retrieve 2QPW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2QPW from S2C, [Save to disk]
  • Re-refined 2qpw structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2QPW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2QPW
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2QPW, from MSDmotif at EBI
  • Fold representative 2qpw from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2qpw_A] [2qpw]
  • SWISS-PROT database: [Q13029]
  • Domain organization of [PRDM2_HUMAN] by SWISSPFAM
  • Domain found in 2QPW: [SET ] by SMART
  • Other resources with information on 2QPW
  • Community annotation for 2QPW at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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