2R5J Viral Protein date Sep 03, 2007
title Pentamer Structure Of Major Capsid Protein L1 Of Human Papil Type 35
authors B.Bishop, J.Dasgupta, X.S.Chen
compound source
Molecule: Major Capsid Protein L1
Chain: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O
Engineered: Yes
Organism_scientific: Human Papillomavirus Type 35
Organism_taxid: 10587
Gene: L1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.315 R_Free 0.348
length a length b length c angle alpha angle beta angle gamma
150.410 176.606 197.073 90.00 92.11 90.00
method X-Ray Diffractionresolution 3.30 Å
F, A, O, J, N, K, E, B, H, M, C, D, I, G, L

Primary referenceCrystal structures of four types of human papillomavirus L1 capsid proteins: understanding the specificity of neutralizing monoclonal antibodies., Bishop B, Dasgupta J, Klein M, Garcea RL, Christensen ND, Zhao R, Chen XS, J Biol Chem. 2007 Oct 26;282(43):31803-11. Epub 2007 Sep 4. PMID:17804402
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1011 Kb) [Save to disk]
  • Biological Unit Coordinates (2r5j.pdb1.gz) 343 Kb
  • Biological Unit Coordinates (2r5j.pdb2.gz) 343 Kb
  • Biological Unit Coordinates (2r5j.pdb3.gz) 343 Kb
  • CSU: Contacts of Structural Units for 2R5J
  • Likely Quarternary Molecular Structure file(s) for 2R5J
  • Structure Factors (2435 Kb)
  • Retrieve 2R5J in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2R5J from S2C, [Save to disk]
  • Re-refined 2r5j structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2R5J in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2R5J
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2R5J, from MSDmotif at EBI
  • Fold representative 2r5j from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2r5j_C] [2r5j_E] [2r5j_D] [2r5j_F] [2r5j_M] [2r5j_K] [2r5j_A] [2r5j_N] [2r5j_O] [2r5j] [2r5j_I] [2r5j_B] [2r5j_G] [2r5j_H] [2r5j_J] [2r5j_L]
  • SWISS-PROT database: [P27232]
  • Domain organization of [VL1_HPV35] by SWISSPFAM
  • Other resources with information on 2R5J
  • Community annotation for 2R5J at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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