2RFD Transferase date Sep 28, 2007
title Crystal Structure Of The Complex Between The Egfr Kinase Dom Mig6 Peptide
authors X.Zhang, K.A.Pickin, R.Bose, N.Jura, P.A.Cole, J.Kuriyan
compound source
Molecule: Epidermal Growth Factor Receptor
Chain: A, B
Fragment: Protein Kinase Domain
Synonym: Receptor Tyrosine-Protein Kinase Erbb-1
Ec: 2.7.10.1
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Egfr, Erbb1
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_strain: Sf9
Expression_system_vector_type: Baculorvirus
Expression_system_plasmid: Pfastbac-Ht

Molecule: Erbb Receptor Feedback Inhibitor 1
Chain: C, D
Fragment: Sequence Database Residues, 340-364
Synonym: Mitogen-Inducible Gene 6 Protein, Mig-6
Engineered: Yes

Synthetic: Yes
Other_details: This Sequence Occurs Naturally In Homo Sapie (Humans).
symmetry Space Group: P 61 2 2
R_factor 0.234 R_Free 0.278
crystal
cell
length a length b length c angle alpha angle beta angle gamma
143.964 143.964 237.852 90.00 90.00 120.00
method X-Ray Diffractionresolution 3.60 Å
ligand SO4 enzyme Transferase E.C.2.7.10.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceInhibition of the EGF receptor by binding of MIG6 to an activating kinase domain interface., Zhang X, Pickin KA, Bose R, Jura N, Cole PA, Kuriyan J, Nature. 2007 Nov 29;450(7170):741-4. PMID:18046415
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (103 Kb) [Save to disk]
  • Biological Unit Coordinates (2rfd.pdb1.gz) 50 Kb
  • Biological Unit Coordinates (2rfd.pdb2.gz) 49 Kb
  • LPC: Ligand-Protein Contacts for 2RFD
  • CSU: Contacts of Structural Units for 2RFD
  • Likely Quarternary Molecular Structure file(s) for 2RFD
  • Structure Factors (106 Kb)
  • Retrieve 2RFD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2RFD from S2C, [Save to disk]
  • Re-refined 2rfd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2RFD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2RFD
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2RFD, from MSDmotif at EBI
  • Fold representative 2rfd from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2rfd_C] [2rfd] [2rfd_A] [2rfd_D] [2rfd_B]
  • SWISS-PROT database: [P00533] [Q9UJM3]
  • Domain organization of [EGFR_HUMAN] [ERRFI_HUMAN] by SWISSPFAM
  • Domain found in 2RFD: [TyrKc ] by SMART
  • Other resources with information on 2RFD
  • Community annotation for 2RFD at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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