2RFE Transferase date Sep 28, 2007
title Crystal Structure Of The Complex Between The Egfr Kinase Dom Mig6 Peptide
authors X.Zhang, K.A.Pickin, R.Bose, N.Jura, P.A.Cole, J.Kuriyan
compound source
Molecule: Epidermal Growth Factor Receptor
Chain: A, B, C, D
Fragment: Protein Kinase Domain
Synonym: Receptor Tyrosine-Protein Kinase Erbb-1
Ec: 2.7.10.1
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Egfr, Erbb1
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_strain: Sf9
Expression_system_vector_type: Baculorvirus
Expression_system_plasmid: Pfastbac-Ht

Molecule: Erbb Receptor Feedback Inhibitor 1
Chain: E, F
Fragment: Sequence Database Residues, 325-364
Synonym: Mitogen-Inducible Gene 6 Protein, Mig-6
Engineered: Yes

Synthetic: Yes
Other_details: This Sequence Occurs Naturally In Homo Sapie (Humans).
symmetry Space Group: P 1 21 1
R_factor 0.229 R_Free 0.271
crystal
cell
length a length b length c angle alpha angle beta angle gamma
90.508 98.425 101.496 90.00 112.59 90.00
method X-Ray Diffractionresolution 2.90 Å
ligand
enzyme Transferase E.C.2.7.10.1 BRENDA
note 2RFE is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceInhibition of the EGF receptor by binding of MIG6 to an activating kinase domain interface., Zhang X, Pickin KA, Bose R, Jura N, Cole PA, Kuriyan J, Nature. 2007 Nov 29;450(7170):741-4. PMID:18046415
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (186 Kb) [Save to disk]
  • Biological Unit Coordinates (2rfe.pdb1.gz) 51 Kb
  • Biological Unit Coordinates (2rfe.pdb2.gz) 49 Kb
  • Biological Unit Coordinates (2rfe.pdb3.gz) 44 Kb
  • Biological Unit Coordinates (2rfe.pdb4.gz) 46 Kb
  • CSU: Contacts of Structural Units for 2RFE
  • Likely Quarternary Molecular Structure file(s) for 2RFE
  • Structure Factors (353 Kb)
  • Retrieve 2RFE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2RFE from S2C, [Save to disk]
  • Re-refined 2rfe structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2RFE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2RFE
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2RFE, from MSDmotif at EBI
  • Fold representative 2rfe from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2rfe_E] [2rfe] [2rfe_A] [2rfe_C] [2rfe_B] [2rfe_F] [2rfe_D]
  • SWISS-PROT database: [P00533] [Q9UJM3]
  • Domain organization of [EGFR_HUMAN] [ERRFI_HUMAN] by SWISSPFAM
  • Domain found in 2RFE: [TyrKc ] by SMART
  • Other resources with information on 2RFE
  • Community annotation for 2RFE at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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