2RHI Transcription Nuclear Protein date Oct 09, 2007
title Crystal Structure Of The 3-Mbt Domain From Human L3mbtl1 In Complex With H1.5k27me2 At 1.66 Angstrom
authors H.Li, D.J.Patel
compound source
Molecule: Lethal(3)Malignant Brain Tumor-Like Protein
Chain: A
Fragment: Repeats Mbt-1, Mbt-2, Mbt-3; Residues 197-526
Synonym: L3, Mbt-Like, L3, Mbt Protein Homolog, H-L3, Mbt Protein, H-L3, Mbt, L3mbtl1;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: L3mbtl, Kiaa0681, L3mbt
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosseta2
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex4t3

Molecule: Histone H1.5
Chain: B
Fragment: N-Terminal Tail Resideus 23-27
Engineered: Yes

Synthetic: Yes
Other_details: This Sequence Occurs Naturally In Humans
symmetry Space Group: P 21 21 2
R_factor 0.187 R_Free 0.201
length a length b length c angle alpha angle beta angle gamma
85.864 93.318 58.640 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.66 Å
ligand MLY, PEG, PG4 enzyme

Primary referenceStructural Basis for Lower Lysine Methylation State-Specific Readout by MBT Repeats of L3MBTL1 and an Engineered PHD Finger., Li H, Fischle W, Wang W, Duncan EM, Liang L, Murakami-Ishibe S, Allis CD, Patel DJ, Mol Cell. 2007 Nov 30;28(4):677-91. PMID:18042461
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (70 Kb) [Save to disk]
  • Biological Unit Coordinates (2rhi.pdb1.gz) 65 Kb
  • LPC: Ligand-Protein Contacts for 2RHI
  • CSU: Contacts of Structural Units for 2RHI
  • Likely Quarternary Molecular Structure file(s) for 2RHI
  • Structure Factors (692 Kb)
  • Retrieve 2RHI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2RHI from S2C, [Save to disk]
  • Re-refined 2rhi structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2RHI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2RHI
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2RHI, from MSDmotif at EBI
  • Fold representative 2rhi from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2rhi_B] [2rhi_A] [2rhi]
  • SWISS-PROT database: [P16401] [Q9Y468]
  • Domain organization of [H15_HUMAN] [LMBL1_HUMAN] by SWISSPFAM
  • Domain found in 2RHI: [MBT ] by SMART
  • Other resources with information on 2RHI
  • Community annotation for 2RHI at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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