2RPJ Transcription date May 19, 2008
title Solution Structure Of Fn14 Crd Domain
authors F.He, W.Dang, Y.Muto, M.Inoue, T.Kigawa, M.Shirouzu, T.Terada, S.Yokoyama, Riken Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Tumor Necrosis Factor Receptor Superfamily Member 12a;
Chain: A
Fragment: Crd Domain, Unp Residues 28-70
Synonym: Fibroblast Growth Factor-Inducible Immediate- Early Response Protein 14, Fgf-Inducible 14, Tweak- Receptor, Tweakr, Cd266 Antigen;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Tnfrsf12a, Fn14
Expression_system: Cell Free Synthesis
Expression_system_vector_type: Vector
Expression_system_vector: P060919-17
Other_details: E. Coli - Cell Free
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSolution structure of the cysteine-rich domain in Fn14, a member of the tumor necrosis factor receptor superfamily., He F, Dang W, Saito K, Watanabe S, Kobayashi N, Guntert P, Kigawa T, Tanaka A, Muto Y, Yokoyama S, Protein Sci. 2009 Mar;18(3):650-6. PMID:19241374
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (215 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 2RPJ
  • Original NMR restraints for 2RPJ from PDB
  • Retrieve 2RPJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2RPJ from S2C, [Save to disk]
  • View 2RPJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2RPJ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2RPJ, from MSDmotif at EBI
  • Fold representative 2rpj from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2rpj] [2rpj_A]
  • SWISS-PROT database: [Q9NP84]
  • Domain organization of [TNR12_HUMAN] by SWISSPFAM
  • Other resources with information on 2RPJ
  • Community annotation for 2RPJ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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