2V5E	Receptor Glycoprotein Complex	date	Oct 03, 2008
title	The Structure Of The Gdnf:Coreceptor Complex: Insights Into Signalling And Heparin Binding.
authors	V.Parkash, V.M.Leppanen, H.Virtanen, J.M.Jurvansuu, M.M.Bespal Y.A.Sidorova, P.Runeberg-Roos, M.Saarma, A.Goldman
compound		source
Molecule: Gdnf Family Receptor Alpha-1 Chain: A Fragment: Residues 150-349 Synonym: Gfr-Alpha-1, Gdnf Receptor Alpha, Gdnfr-Alpha, Tgf Related Neurotrophic Factor Receptor 1, Ret Ligand 1; Engineered: Yes		Organism_scientific: Rattus Norvegicus Organism_common: Norway Rat Organism_taxid: 10116 Expression_system: Spodoptera Frugiperda Expression_system_common_fall Armyworm; Expression_system_taxid: 7108 Expression_system_cell_line: Sf9 Expression_system_vector_type: Baculovirus Expression_system_plasmid: Pfastbac
Molecule: Glial Cell Line-Derived Neurotrophic Factor Chain: B Fragment: Residues 111-211 Synonym: Astrocyte-Derived Trophic Factor, Hgdnf, Atf Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Spodoptera Frugiperda Expression_system_common_fall Armyworm; Expression_system_taxid: 7108 Expression_system_cell_line: Sf9 Expression_system_vector_type: Baculovirus Expression_system_plasmid: Pfastbac
symmetry	Space Group: C 1 2 1	R_factor 0.184 R_Free 0.237
crystal cell	length a length b length c angle alpha angle beta angle gamma 58.900 75.700 105.500 90.00 91.90 90.00
method	X-Ray Diffraction	resolution	2.35 Å
ligand	EDO, GU4, NAG, YYJ	enzyme
Gene Ontology	Chain Function Process Component A B
Primary reference	The structure of the GDNF:Coreceptor complex: Insights into RET signalling and heparin binding., Parkash V, Leppanen VM, Virtanen H, Jurvansuu JM, Bespalov MM, Sidorova YA, Runeberg-Roos P, Saarma M, Goldman A, J Biol Chem. 2008 Oct 8. PMID:18845535

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (60 Kb) [Save to disk] Biological Unit Coordinates (2v5e.pdb1.gz) 105 Kb LPC: Ligand-Protein Contacts for 2V5E CSU: Contacts of Structural Units for 2V5E Likely Quarternary Molecular Structure file(s) for 2V5E Structure Factors (153 Kb) Retrieve 2V5E in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2V5E from S2C, [Save to disk] Re-refined 2v5e structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

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Visual 3D analysis of 2V5E

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Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute Crystal Contacts, from CryCo at Weizmann Institute 3D motif for 2V5E, from MSDmotif at EBI Fold representative 2v5e from FSSP and Dali (Families of Structurally Similar Proteins)

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2v5e_A] [2v5e_B] [2v5e] SWISS-PROT database: [P39905] [Q62997] Domain organization of [GDNF_HUMAN] [GFRA1_RAT] by SWISSPFAM Domains found in 2V5E: [GDNF] [TGFB ] by SMART

Other resources with information on 2V5E

Community annotation for 2V5E at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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