2V5E	Receptor Glycoprotein Complex	date	Oct 03, 2008
title	The Structure Of The Gdnf:Coreceptor Complex: Insights Into Signalling And Heparin Binding.
authors	V.Parkash, V.M.Leppanen, H.Virtanen, J.M.Jurvansuu, M.M.Bespal Y.A.Sidorova, P.Runeberg-Roos, M.Saarma, A.Goldman
compound		source
Molecule: Gdnf Family Receptor Alpha-1 Chain: A Fragment: Residues 150-349 Synonym: Gfr-Alpha-1, Gdnf Receptor Alpha, Gdnfr-Alpha, Tgf Related Neurotrophic Factor Receptor 1, Ret Ligand 1; Engineered: Yes		Organism_scientific: Rattus Norvegicus Organism_common: Norway Rat Organism_taxid: 10116 Expression_system: Spodoptera Frugiperda Expression_system_common_fall Armyworm; Expression_system_taxid: 7108 Expression_system_cell_line: Sf9 Expression_system_vector_type: Baculovirus Expression_system_plasmid: Pfastbac
Molecule: Glial Cell Line-Derived Neurotrophic Factor Chain: B Fragment: Residues 111-211 Synonym: Astrocyte-Derived Trophic Factor, Hgdnf, Atf Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Spodoptera Frugiperda Expression_system_common_fall Armyworm; Expression_system_taxid: 7108 Expression_system_cell_line: Sf9 Expression_system_vector_type: Baculovirus Expression_system_plasmid: Pfastbac
symmetry	Space Group: C 1 2 1	R_factor 0.184 R_Free 0.237
crystal cell	length a length b length c angle alpha angle beta angle gamma 58.900 75.700 105.500 90.00 91.90 90.00
method	X-Ray Diffraction	resolution	2.35 Å
ligand	EDO, GU4, NAG, YYJ	enzyme
Gene Ontology	Chain Function Process Component A B
Primary reference	The structure of the GDNF:Coreceptor complex: Insights into RET signalling and heparin binding., Parkash V, Leppanen VM, Virtanen H, Jurvansuu JM, Bespalov MM, Sidorova YA, Runeberg-Roos P, Saarma M, Goldman A, J Biol Chem. 2008 Oct 8. PMID:18845535

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (60 Kb) [Save to disk] Biological Unit Coordinates (2v5e.pdb1.gz) 105 Kb LPC: Ligand-Protein Contacts for 2V5E CSU: Contacts of Structural Units for 2V5E Likely Quarternary Molecular Structure file(s) for 2V5E Structure Factors (153 Kb) Retrieve 2V5E in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2V5E from S2C, [Save to disk] Re-refined 2v5e structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2V5E in 3D

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Visual 3D analysis of 2V5E

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2V5E, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2v5e_A] [2v5e_B] [2v5e] SWISS-PROT database: [P39905] [Q62997] Domain organization of [GDNF_HUMAN] [GFRA1_RAT] by SWISSPFAM Domains found in 2V5E: [GDNF] [TGFB ] by SMART

Other resources with information on 2V5E

Community annotation for 2V5E at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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