2VDI		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	CAP, EDO, HYP, KCX, MG, MME, SMC	enzyme
Gene Ontology	Chain Function Process Component H, B, A, F, C, G, E, D
Primary reference	Structural and functional consequences of the replacement of proximal residues Cys(172) and Cys(192) in the large subunit of ribulose-1,5-bisphosphate carboxylase/oxygenase from Chlamydomonas reinhardtii., Garcia-Murria MJ, Karkehabadi S, Marin-Navarro J, Satagopan S, Andersson I, Spreitzer RJ, Moreno J, Biochem J. 2008 Apr 15;411(2):241-7. PMID:18072944

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (793 Kb) [Save to disk] Biological Unit Coordinates (2vdi.pdb1.gz) 779 Kb LPC: Ligand-Protein Contacts for 2VDI CSU: Contacts of Structural Units for 2VDI Likely Quarternary Molecular Structure file(s) for 2VDI Structure Factors (947 Kb) Retrieve 2VDI in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2VDI from S2C, [Save to disk] Re-refined 2vdi structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2VDI in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2vdi] [2vdi_A] [2vdi_B] [2vdi_C] [2vdi_D] [2vdi_E] [2vdi_F] [2vdi_G] [2vdi_H] [2vdi_I] [2vdi_J] [2vdi_K] [2vdi_L] [2vdi_M] [2vdi_N] [2vdi_O] [2vdi_P] SWISS-PROT database: [P00877] [P00873] Domain found in 2VDI: [RuBisCO_small ] by SMART

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022,2024 Bioinformatics Unit Weizmann Institute of Science

---