2VRD Nuclear Protein date Mar 31, 2008
title The Structure Of The Zinc Finger From The Human Spliceosomal Protein U1c
authors Y.Muto, D.Pomeranz-Krummel, C.Oubridge, H.Hernandez, C.Robinson, D.Neuhaus, K.Nagai
compound source
Molecule: U1 Small Nuclear Ribonucleoprotein C
Chain: A
Fragment: Zinc Finger Domain, Residues 1-61
Synonym: U1 Snrnp Protein C, U1c Protein, U1-C
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: B834(De3)
Expression_system_plasmid: Pet3b
methodSolution NMR
ligand ZN enzyme
note 2VRD is a representative structure and supersedes 1UW2
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe structure and biochemical properties of the human spliceosomal protein U1C., Muto Y, Pomeranz Krummel D, Oubridge C, Hernandez H, Robinson CV, Neuhaus D, Nagai K, J Mol Biol. 2004 Jul 30;341(1):185-98. PMID:15312772
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (782 Kb) [Save to disk]
  • LPC: Ligand-Protein Contacts for 2VRD
  • CSU: Contacts of Structural Units for 2VRD
  • Original NMR restraints for 2VRD from PDB
  • Retrieve 2VRD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2VRD from S2C, [Save to disk]
  • View 2VRD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2VRD
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2VRD, from MSDmotif at EBI
  • Fold representative 2vrd from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2vrd] [2vrd_A]
  • SWISS-PROT database: [P09234]
  • Domain organization of [RU1C_HUMAN] by SWISSPFAM
  • Domain found in 2VRD: [ZnF_U1 ] by SMART
  • Other resources with information on 2VRD
  • Community annotation for 2VRD at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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