2VRD Nuclear Protein date Mar 31, 2008
title The Structure Of The Zinc Finger From The Human Spliceosomal Protein U1c
authors Y.Muto, D.Pomeranz-Krummel, C.Oubridge, H.Hernandez, C.Robinson, D.Neuhaus, K.Nagai
compound source
Molecule: U1 Small Nuclear Ribonucleoprotein C
Chain: A
Fragment: Zinc Finger Domain, Residues 1-61
Synonym: U1 Snrnp Protein C, U1c Protein, U1-C
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: B834(De3)
Expression_system_plasmid: Pet3b
methodSolution NMR
ligand ZN enzyme
note 2VRD is a representative structure and supersedes 1UW2

Primary referenceThe structure and biochemical properties of the human spliceosomal protein U1C., Muto Y, Pomeranz Krummel D, Oubridge C, Hernandez H, Robinson CV, Neuhaus D, Nagai K, J Mol Biol. 2004 Jul 30;341(1):185-98. PMID:15312772
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (782 Kb) [Save to disk]
  • LPC: Ligand-Protein Contacts for 2VRD
  • CSU: Contacts of Structural Units for 2VRD
  • Original NMR restraints for 2VRD from PDB
  • Retrieve 2VRD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2VRD from S2C, [Save to disk]
  • View 2VRD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2VRD
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2VRD, from MSDmotif at EBI
  • Fold representative 2vrd from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2vrd] [2vrd_A]
  • SWISS-PROT database: [P09234]
  • Domain organization of [RU1C_HUMAN] by SWISSPFAM
  • Domain found in 2VRD: [ZnF_U1 ] by SMART
  • Other resources with information on 2VRD
  • Community annotation for 2VRD at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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