2VXJ	Sugar Binding Protein	date	Jul 04, 2008
title	Crystal Structure Of Pa-Il Lectin Complexed With Agal13bgal1 1.9 A Resolution
authors	B.Blanchard, A.Nurisso, E.Hollville, C.Tetaud, J.Wiels, M.Pokorna M.Wimmerova, A.Varrot, A.Imberty
compound		source
Molecule: Pa-I Galactophilic Lectin Chain: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R V, W, X; Fragment: Residues 2-122 Synonym: Pa-Il, Galactose-Binding Lectin Engineered: Yes		Organism_scientific: Pseudomonas Aeruginosa Organism_taxid: 208964 Strain: Pao1 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_plasmid: Pet25b
symmetry	Space Group: P 1	R_factor 0.185 R_Free 0.245
crystal cell	length a length b length c angle alpha angle beta angle gamma 79.184 86.521 119.078 93.93 98.16 90.08
method	X-Ray Diffraction	resolution	1.90 Å
ligand	BGC, CA, EDO, GAL, GLA, GLC	enzyme
Gene Ontology	Chain Function Process Component S, F, T, N, K, E, V, Q, M, C, L, A, J, O, W, X, P, B, H, D, R, I, G, U
Primary reference	Structural Basis of the Preferential Binding for Globo-Series Glycosphingolipids Displayed by Pseudomonas aeruginosa Lectin I., Blanchard B, Nurisso A, Hollville E, Tetaud C, Wiels J, Pokorna M, Wimmerova M, Varrot A, Imberty A, J Mol Biol. 2008 Aug 22. PMID:18762193

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (514 Kb) [Save to disk] Biological Unit Coordinates (2vxj.pdb1.gz) 28 Kb Biological Unit Coordinates (2vxj.pdb2.gz) 28 Kb Biological Unit Coordinates (2vxj.pdb3.gz) 28 Kb Biological Unit Coordinates (2vxj.pdb4.gz) 28 Kb Biological Unit Coordinates (2vxj.pdb5.gz) 28 Kb Biological Unit Coordinates (2vxj.pdb6.gz) 28 Kb Biological Unit Coordinates (2vxj.pdb7.gz) 28 Kb Biological Unit Coordinates (2vxj.pdb8.gz) 28 Kb Biological Unit Coordinates (2vxj.pdb9.gz) 28 Kb LPC: Ligand-Protein Contacts for 2VXJ CSU: Contacts of Structural Units for 2VXJ Likely Quarternary Molecular Structure file(s) for 2VXJ Structure Factors (3952 Kb) Retrieve 2VXJ in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2VXJ from S2C, [Save to disk] Re-refined 2vxj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2VXJ in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2VXJ

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2VXJ, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2vxj_P] [2vxj_M] [2vxj_N] [2vxj_D] [2vxj_Q] [2vxj_A] [2vxj_J] [2vxj_V] [2vxj_W] [2vxj_U] [2vxj_B] [2vxj_K] [2vxj_I] [2vxj_T] [2vxj_F] [2vxj] [2vxj_X] [2vxj_C] [2vxj_O] [2vxj_E] [2vxj_L] [2vxj_H] [2vxj_R] [2vxj_S] [2vxj_G] SWISS-PROT database: [Q05097] Domain organization of [PA1L_PSEAE] by SWISSPFAM

Other resources with information on 2VXJ

Community annotation for 2VXJ at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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