2VXJ CRYSTAL STRUCTURE OF PA-IL LECTIN COMPLEXED WITH AGAL13BGAL14GLC AT 1.9 A RESOLUTION date
authors Blanchard, B., Nurisso, A., Hollville, E., Tetaud, C., Wiels, J., Pokorna, M., Wimmerova, M., Varrot, A., Imberty, A.
compound source
symmetry
R_factor
R_Free 0.245
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.90
ligand BGC, CA, EDO, GAL, GLA, GLC enzyme
Gene
Ontology
ChainFunctionProcessComponent
S, F, T, N, K, E, V, Q, M, C, L, A, J, O, W, X, P, B, H, D, R, I, G, U


Primary referenceStructural Basis of the Preferential Binding for Globo-Series Glycosphingolipids Displayed by Pseudomonas aeruginosa Lectin I., Blanchard B, Nurisso A, Hollville E, Tetaud C, Wiels J, Pokorna M, Wimmerova M, Varrot A, Imberty A, J Mol Biol. 2008 Aug 22. PMID:18762193
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (514 Kb) [Save to disk]
  • Biological Unit Coordinates (2vxj.pdb1.gz) 28 Kb
  • Biological Unit Coordinates (2vxj.pdb2.gz) 28 Kb
  • Biological Unit Coordinates (2vxj.pdb3.gz) 28 Kb
  • Biological Unit Coordinates (2vxj.pdb4.gz) 28 Kb
  • Biological Unit Coordinates (2vxj.pdb5.gz) 28 Kb
  • Biological Unit Coordinates (2vxj.pdb6.gz) 28 Kb
  • Biological Unit Coordinates (2vxj.pdb7.gz) 28 Kb
  • Biological Unit Coordinates (2vxj.pdb8.gz) 28 Kb
  • Biological Unit Coordinates (2vxj.pdb9.gz) 28 Kb
  • LPC: Ligand-Protein Contacts for 2VXJ
  • CSU: Contacts of Structural Units for 2VXJ
  • Likely Quarternary Molecular Structure file(s) for 2VXJ
  • Structure Factors (3952 Kb)
  • Retrieve 2VXJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2VXJ from S2C, [Save to disk]
  • Re-refined 2vxj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2VXJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2VXJ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2VXJ, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2vxj_P] [2vxj_M] [2vxj_N] [2vxj_D] [2vxj_Q] [2vxj_A] [2vxj_J] [2vxj_V] [2vxj_W] [2vxj_U] [2vxj_B] [2vxj_K] [2vxj_I] [2vxj_T] [2vxj_F] [2vxj] [2vxj_X] [2vxj_C] [2vxj_O] [2vxj_E] [2vxj_L] [2vxj_H] [2vxj_R] [2vxj_S] [2vxj_G]
  • SWISS-PROT database: [Q05097]
  • Domain organization of [PA1L_PSEAE] by SWISSPFAM
    • Other resources with information on 2VXJ
  • Community annotation for 2VXJ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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