2W2X Signaling Protein Hydrolase date Nov 04, 2008
title Complex Of Rac2 And Plcg2 Spph Domain
authors O.Opaleye, T.D.Bunney, S.M.Roe, L.H.Pearl
compound source
Molecule: Ras-Related C3 Botulinum Toxin Substrate 2
Chain: A, B
Fragment: Residues 2-179
Synonym: P21-Rac2, Small G Protein, Gx, Rac2
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
Expression_system_cell_line: Sf9
Expression_system_vector_type: Baculovirus

Molecule: 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodi Gamma-2;
Chain: C
Fragment: Split Ph Domain, Residues 471-514,841-913
Synonym: Phosphoinositide Phospholipase C, Phospholipase C- Plcg2;
Ec: 3.1.4.11
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
Expression_system_cell_line: Sf9
Expression_system_vector_type: Baculovirus

Molecule: 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodi Gamma-2;
Chain: D
Fragment: Split Ph Domain, Residues 471-514,841-913
Synonym: Phosphoinositide Phospholipase C, Phospholipase C- Plcg2;
Ec: 3.1.4.11
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
Expression_system_cell_line: Sf9
Expression_system_vector_type: Baculovirus
symmetry Space Group: C 1 2 1
R_factor 0.234 R_Free 0.294
crystal
cell
length a length b length c angle alpha angle beta angle gamma
131.570 84.459 74.196 90.00 112.21 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand GSP, MG enzyme Hydrolase E.C.3.1.4.11 BRENDA
note 2W2X is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • protein kinase regulator act...


  • D, C


    Primary referenceStructural insights into formation of an active signaling complex between Rac and phospholipase C gamma 2., Bunney TD, Opaleye O, Roe SM, Vatter P, Baxendale RW, Walliser C, Everett KL, Josephs MB, Christow C, Rodrigues-Lima F, Gierschik P, Pearl LH, Katan M, Mol Cell. 2009 Apr 24;34(2):223-33. PMID:19394299
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (195 Kb) [Save to disk]
  • Biological Unit Coordinates (2w2x.pdb1.gz) 95 Kb
  • Biological Unit Coordinates (2w2x.pdb2.gz) 94 Kb
  • LPC: Ligand-Protein Contacts for 2W2X
  • CSU: Contacts of Structural Units for 2W2X
  • Likely Quarternary Molecular Structure file(s) for 2W2X
  • Structure Factors (1227 Kb)
  • Retrieve 2W2X in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2W2X from S2C, [Save to disk]
  • Re-refined 2w2x structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2W2X in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2W2X
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2W2X, from MSDmotif at EBI
  • Fold representative 2w2x from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2w2x_C] [2w2x_D] [2w2x_A] [2w2x_B] [2w2x]
  • SWISS-PROT database: [P16885] [P15153]
  • Domain organization of [PLCG2_HUMAN] [RAC2_HUMAN] by SWISSPFAM
  • Domains found in 2W2X: [PH] [RHO ] by SMART
  • Other resources with information on 2W2X
  • Community annotation for 2W2X at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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