2WQO Transferase date Aug 24, 2009
title Structure Of Nek2 Bound To The Aminopyridine Cct241950
authors C.Mas-Droux, R.Bayliss
compound source
Molecule: Serinethreonine-Protein Kinase Nek2
Chain: A
Fragment: Catalytic Domain, Residues 1-271
Ec: 2.7.11.1
Engineered: Yes Synonym Nima-Related Protein Kinase 2, Nima-Like Protein Kinase 1, Hspk 21, Nek2
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_variant: Codonplus Rpil
Expression_system_plasmid: Pet30
symmetry Space Group: C 1 2 1
R_factor 0.1833 R_Free 0.2350
crystal
cell
length a length b length c angle alpha angle beta angle gamma
100.430 56.840 73.490 90.00 128.09 90.00
method X-Ray Diffractionresolution 2.17 Å
ligand CL, VGK enzyme Transferase E.C.2.7.11.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceAn autoinhibitory tyrosine motif in the cell-cycle-regulated Nek7 kinase is released through binding of Nek9., Richards MW, O'Regan L, Mas-Droux C, Blot JM, Cheung J, Hoelder S, Fry AM, Bayliss R, Mol Cell. 2009 Nov 25;36(4):560-70. PMID:19941817
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (49 Kb) [Save to disk]
  • Biological Unit Coordinates (2wqo.pdb1.gz) 44 Kb
  • LPC: Ligand-Protein Contacts for 2WQO
  • CSU: Contacts of Structural Units for 2WQO
  • Structure Factors (403 Kb)
  • Retrieve 2WQO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2WQO from S2C, [Save to disk]
  • Re-refined 2wqo structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2WQO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2WQO
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2WQO, from MSDmotif at EBI
  • Fold representative 2wqo from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2wqo] [2wqo_A]
  • SWISS-PROT database: [P51955]
  • Domain organization of [NEK2_HUMAN] by SWISSPFAM
  • Domain found in 2WQO: [S_TKc ] by SMART
  • Other resources with information on 2WQO
  • Community annotation for 2WQO at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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