2WVI Transferase date Oct 16, 2009
title Crystal Structure Of The N-Terminal Domain Of Bubr1
authors S.D'Arcy, O.R.Davies, T.L.Blundell, V.M.Bolanos-Garcia
compound source
Molecule: Mitotic Checkpoint Serinethreonine-Protein Kinase Bub1 Beta;
Chain: A
Fragment: N-Terminal Tpr Domain, Residues 57-220
Synonym: Mad3bub1-Related Protein Kinase, Hbubr1, Mitotic Checkpoint Kinase Mad3l, Protein Ssk1, Bubr1;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_plasmid: Phat4
symmetry Space Group: P 32 2 1
R_factor 0.22188 R_Free 0.25986
length a length b length c angle alpha angle beta angle gamma
62.796 62.796 90.450 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.80 Å
ligand ACT, EDO, PR enzyme Transferase E.C. BRENDA

Primary referenceDefining the molecular basis of BubR1 kinetochore interactions and APC/C-CDC20 inhibition., D'Arcy S, Davies OR, Blundell TL, Bolanos-Garcia VM, J Biol Chem. 2010 May 7;285(19):14764-76. Epub 2010 Mar 10. PMID:20220147
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (37 Kb) [Save to disk]
  • Biological Unit Coordinates (2wvi.pdb1.gz) 31 Kb
  • LPC: Ligand-Protein Contacts for 2WVI
  • CSU: Contacts of Structural Units for 2WVI
  • Structure Factors (236 Kb)
  • Retrieve 2WVI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2WVI from S2C, [Save to disk]
  • Re-refined 2wvi structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2WVI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2WVI
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2WVI, from MSDmotif at EBI
  • Fold representative 2wvi from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2wvi_A] [2wvi]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2WVI: [Mad3_BUB1_I ] by SMART
  • Other resources with information on 2WVI
  • Community annotation for 2WVI at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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